Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03827 ATGGAGCTCGTGTATCTGTCACCCTACAGAATGTTGACTTTCTTCATTTGTTTTCTGGGTGGTTTACTTATTGAAGCTCAGCACCAAGCAGAATTCATCAGCATAGATTGCGGAGCTCCTGCAGATGTGAGATATACTGAAAGGCGCACAGGCATAGATTACACTTCAGATGCAAATTTGATAAATACTGGTGTGAGTAAGTCAGTAGCATCTGAGTTCAAAGAAAAGCATCAACAACAGATGTGGACTGTGAGAAGCTTCCCGGAAGGAAAAAGGAACTGCTACAAAATAAACATCACAAGAGACTCTAAGTATCTTATCCGGACTAGTTATTTGTACGGAAATTATGATGGGCTGAATAAGACACCACAGTTTGATACTCATCTCGGGGCTAACTGGTGGCATACTGTGACTCTGTCCAATGCATCCACTCCTCAAGGCAATTCGTTGATACATGTGCCTTCACGAGATTATCTACATATCTGTCTGGTTAACACAGGCCATGGAACACCATTTATATCTGCCATAGGATTGAGAACTATGCCAAATGATATTTATGTCACTCAATATGAATCACTGCAAACTTACCACCGGTGGGATTTAGGTTCAAACAAAGACTACAGGTACCCAGATGATGTTTTTGATCGTTTCTGGAAAGGCACCCTTGGTGACAGCAAAGATTGGTCACAATTAAGTGTTTCTGTTCCTGCCGAGTCATTAACGCAGAATAATTACAAACCGCCTGCAATTGTGATGAGCACCGCAGTTACACCAGCAAATGCTAGTGCTCCACTGCTAATAAGCTGGGAACCAGAACATGAAACTGACCAATTCTATGTCTACATGCACTTCATGGAGATTCAAGAGTTAACCACTAACCAGACAAGACAATTCAACATCATGATGAACGGTCAACCATTGCTTTCAAATTGTTCTCCACAGTACCATATTGCGAATACTGTACATTCGAGGTCATCGTTCAGTGGAAAAGTAATAAAATATTCACTGGAGAGGACCGAAAGTTCTACCCTGCCTCCCATCATCAGTGCCATTGAAATTTACAGAGTACAGGAATTCCCCCAATCTGATACATTCCAAGGAGATGTTGATGCCATTACAAGCATTAAGTCAGTTTATGGAGTGAAAAGAGATTGGCAAGGTGATCCATGCGCCCCTGTAGACTACTTGTGGGATGGTCTCAACTGTACTTATCTCGGCAATGAGCCAAGAATCACAGCTTTGAATTTATCTTCAAGTGGATTATCTGGAAAGATTGACCCTTCAATCTCAAAACTCACCATGTTGGAGAAGCTGGACTTATCGAATAATAGCTTAAACGACGAGGTTCCTGATTTTTTGTCCCAGTTACAACACTTGAAGATCTTAAACTTGGAGAAGAATAACCTCTCCGGTTCAATTCCCTCAGCACTGGTTGAAAAATCTAAGGAAGGTTCTCTCACCCTAAGTTTGGGTCAAAATCCATATGTCTGTGAACATGGTCAGTGCATGGAGAACAGAAATAACATTGTTATGCCCTTGGTAGCATCGATATGCGGGGTTTTGATCCTTCTAATGGCCGTGGGAGCTGTATTGTGGATCCTTAAGAGGAGAAAATCAAAAGCTTGGATGGTAGAGAAGGATCAAAGTGAGTACACAGAACAAGATGACTCATTACAGCAGTTTAAAAAACGAATATATTCATATTCTGATATCATTAAAATCACCAACAATTTCACTACAATTGTTGGTAAAGGAGGATTTGGAACAGTTTATCTGGGCTATATTTATGACACTCCAGTTGCTGTCAAAATGCTTTCCCCTTCATCATGTCGTGGCTATGAACAATTTCAAGCAGAGGTTAAAATTCTAATGAGAGTTCATCACAAAAATCTGACTTCCCTTGTTGGTTATTGTAATCAAGGAACCAATAAGAGTCTCATATATGAGTACATGGCTAATGGAAACTTGCTGGAACATCTCTCTGGTAAGCACAGTAAATCAAAATTCTTGAGCTGGGTAGACAGACTTCGTATAGCAGTGGACACAGCCTTGGGATTGGAGTATCTTCAAAGCGGTTGCAAGCCATCAATAATACACAGGGACGTAAAATCTTCAAACATCTTGTTGAATGAACACTTCCAAGCGAAATTATCTGATTTTGGTCTATCCAAAATTATCCCATCTGATGGGGGATCACATGTGTCAACTGTTGTGGCTGGTACTCCTGGTTATCTGGACCCTGACTATTACACATCCAATAGATTAACAGAGAAAAGTGATGTTTATAGCTTTGGAGTGGTTCTTTTGGAAATAATCACAGGCCAGCAAGTAATAGCAAGGAATGAAGAAAGAAGTCACATAATTGAATGGGTTAGTTCCCTGGTTGCATTAGGGGATATCATGGCCATTGTTGACTCAAGGTTTGAAGGAGATTTTGACATTAACTCAGCCTGGAAAGCCGTGGAAATAGCAATAGCTTGTGTTTCTCTAAGTCCCAACGAAAGGCCAATTATGAGTGTGATAGTGTCTGAACTAAAGGAGACTTTAGCAACCGAATTAGCTCGAACAAAATATAACAGTGATGCAAATTCATTTGAACCGGTCAATGTGAATCTGAGCACCCAACTCATTCCTCATGCTAGGTAA 2646 0.4059 MELVYLSPYRMLTFFICFLGGLLIEAQHQAEFISIDCGAPADVRYTERRTGIDYTSDANLINTGVSKSVASEFKEKHQQQMWTVRSFPEGKRNCYKINITRDSKYLIRTSYLYGNYDGLNKTPQFDTHLGANWWHTVTLSNASTPQGNSLIHVPSRDYLHICLVNTGHGTPFISAIGLRTMPNDIYVTQYESLQTYHRWDLGSNKDYRYPDDVFDRFWKGTLGDSKDWSQLSVSVPAESLTQNNYKPPAIVMSTAVTPANASAPLLISWEPEHETDQFYVYMHFMEIQELTTNQTRQFNIMMNGQPLLSNCSPQYHIANTVHSRSSFSGKVIKYSLERTESSTLPPIISAIEIYRVQEFPQSDTFQGDVDAITSIKSVYGVKRDWQGDPCAPVDYLWDGLNCTYLGNEPRITALNLSSSGLSGKIDPSISKLTMLEKLDLSNNSLNDEVPDFLSQLQHLKILNLEKNNLSGSIPSALVEKSKEGSLTLSLGQNPYVCEHGQCMENRNNIVMPLVASICGVLILLMAVGAVLWILKRRKSKAWMVEKDQSEYTEQDDSLQQFKKRIYSYSDIIKITNNFTTIVGKGGFGTVYLGYIYDTPVAVKMLSPSSCRGYEQFQAEVKILMRVHHKNLTSLVGYCNQGTNKSLIYEYMANGNLLEHLSGKHSKSKFLSWVDRLRIAVDTALGLEYLQSGCKPSIIHRDVKSSNILLNEHFQAKLSDFGLSKIIPSDGGSHVSTVVAGTPGYLDPDYYTSNRLTEKSDVYSFGVVLLEIITGQQVIARNEERSHIIEWVSSLVALGDIMAIVDSRFEGDFDINSAWKAVEIAIACVSLSPNERPIMSVIVSELKETLATELARTKYNSDANSFEPVNVNLSTQLIPHAR 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03827 881 SUPERFAMILY Protein kinase-like (PK-like) 555 845 IPR011009 -
Viun5g03827 881 FunFam Leucine-rich repeat receptor-like kinase 367 498 - -
Viun5g03827 881 SMART serkin_6 576 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03827 881 Pfam Protein tyrosine and serine/threonine kinase 579 845 IPR001245 GO:0004672|GO:0006468
Viun5g03827 881 CDD STKc_IRAK 582 847 - -
Viun5g03827 881 SUPERFAMILY L domain-like 394 481 - -
Viun5g03827 881 Gene3D Ribonuclease Inhibitor 370 488 IPR032675 -
Viun5g03827 881 Gene3D Transferase(Phosphotransferase) domain 1 651 869 - -
Viun5g03827 881 ProSitePatterns Protein kinases ATP-binding region signature. 582 603 IPR017441 GO:0005524
Viun5g03827 881 Gene3D Phosphorylase Kinase; domain 1 558 650 - -
Viun5g03827 881 ProSitePatterns Serine/Threonine protein kinases active-site signature. 697 709 IPR008271 GO:0004672|GO:0006468
Viun5g03827 881 Gene3D - 192 357 - -
Viun5g03827 881 PANTHER OS07G0107800 PROTEIN-RELATED 33 849 - -
Viun5g03827 881 FunFam Leucine-rich repeat receptor-like protein kinase 551 650 - -
Viun5g03827 881 ProSiteProfiles Protein kinase domain profile. 576 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03827 881 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 651 858 - -
Viun5g03827 881 Pfam Malectin-like domain 35 356 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03827 Viun-Chr5 46805199 46811809 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03827 11 881 Receptor kinase-like Gene Family AT1G51800 48.103 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Viun5g03827 Malectin_like 4.6e-112 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03827 - - vun:114185309 1396.72