Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03825 ATGCAATTTGATGTTTTAGGATTCATCAGCTTAGATTGCGGAGCTGAAGCAGGTGTGAACTATACTGAGCCATCACTAGGCATAACTTATGTTTCGGATGCAAATTTCATAAACACTGGTGTGAGTGGGAAAATAGCATCTAATGCGACCAGCACATACATTGAACGACCACTGCTGAGGCTGAGAAGCTTTCCGGAAGGGAAAAGGAACTGCTACAAAATAAAAGTCACAGGAGGCAACAAGTATCTCATACGCACAGTTTTTCTGTATGGAAATTATGATGGCCTAAATATCTCACCACAGTTTGATCTTCTTCTGGGTCCTAACCACTTGGATACAGTCATTATAGACAATGCATCCAGTAACAAAATCAAGGAGATCATACATATACCTTCACTGGATTTTGTACAAATCTGTCTGGTTAACACAGGCCATGGCACACCATTTATAACAACTATAGAATTCAGGACTTTGAAAAATGATACATACGTGACTACATCGGGATCACTGGAAACTTACTTGCGCTGCGATTTGGGTTCAGACATAATGTACAGGTACCCGGTTGATGCTTATGATCGCTACTGGTTCACCTGTATGGGCGAGAATTGGAAACAACTAAATGCTTCGATTCCTGATGATTCTTTCAATAAGAGCGATCTTTACCAACCGGGATCTATTATCATGAGCACCGCAGTTGCGTCAGGAGATGATAGTACTCCATTGCTAATAAGCTGGTATTCAGAACATGAAACTGACCAATTCTATGTGTACATGCACTTTACGGAAATTCAAGTGTTACCCACCAATCAGACAAGACAATTCAACATCACTAGGAACGGTGAATTAAGGGTTCCGAATTTTTCTCCGCGGTACCTTGCCGTCGACACTTTATATACCTCGTCAGCCATCAGTGGGAAACAGATTAAATATTCCCTGGAGAGGACTGAAAATTCAACCCTGCCTCCCATCGTCAGTGCCATTGAACTTTACAGAGTAATAGATTTACAGAAACCACAAACATTCCAAGGAGATGTTGAAGCTATTGCAAGCATCAAGTCAGTTTATGGAGTGAAAAGGGATTGGGAAGGTGATCCATGCGCCCCAGTAGACTACTTGTGGGATGGTCTCATCTGTACTTATGACAACGACTTCCCGAGAATCACAGCTTTGAATCTATCTTCGAGTGGATTGTCAGGAAAGATACACCCTTCAATCTCAAACCTCACCATGTTGGAGAAGTTGGATTTATCTAACAATTGCTTAAATGGTGAAGTTCCTGATTTCCTGTCTCAGTTACAACACTTGAAGATCTTAAACTTAGAGAAGAATAACCTCTCCAGTTCAATTCCATCTGCACTTCTTCAAAAATCACGCGAAGGTTCTCTCTCACTGAGTGTGGGTCAAAATCCATATCCATGTGAATCTGGCCAATTCAACGAGAAGAAAAAGAAAAACACTCTTATACCCATAGTAGCCTCGACTAGTGGGGCTTTAATCATTCTAATAGCAGTTGGAATATTGTGGATCCTTAAAAGGAAAAAATCAAAAGTTGAAAAATTTACAGATGCGGTGGCAGTAAATCATCAGAGTGAGAATTCACAGCAATCCACAGAAATGGATGGTTTGTTCCTGCAACGAAAAAGTCAAATGTATTCATACTATGATGTCCTTCAAATCACTAACAATTTCAATAGAATTATTGGTAAAGGAGGATTTGGAACAGTTTACCTTGGCTTTATCGATGACACTCCAGTTGCGGTGAAAATGCTTTCCCCATCAGCAGTTCTTGGTTATCAACAATTTCAAACAGAGGTTAAACTTCTAATCAGAGTTCATCACAAAAATTTGACATCCCTAATTGGTTACTGTAACGAAGGAACCAATAAGGGCCTCATATATGAGTACATGGCTAAAGGGAACTTACGAGAACATCTCTCAGGTAAACACAACGAATCACCATTATTGAGGTGGAAGGACAGACTTCGTGTAGCAGTGGATGCAGCCTTAGGATTGGAATATCTGCAAAATGGTTGCAAGCCTCCTATAATCCACAGAGATGTAAAATCTACGAATATCTTGTTGGATGAACATTTCCAAGCAAAGTTATCTGATTTCGGTCTATCCAAAGTTGTCCCGGATGATGGGAGATCTCATGTGTCAACTGTTATTGCTGGTACTCTTGGTTATCTGGACCCTCACTACCACTCTTCCAATAGATTAACGCAGAAAAGTGATGTTTATAGCTTTGGAGTTGTTCTTTTGGAAATAATCACGAATCAAGCAGTAATGGCAGGGAATGAAGAAACGGGTCACATAAGTGAACGAGTTAACTCCATGATATCAAGAGGGGATATCAGGGCCATAGTTGATCCAAGCTTAGAAGGAAATTTTGACATAAACTCAGCATGGAAAGCCGTAGAAATAGCAATGGCTTGTGTTTCTCCAAATCCTAATGAAAGGCCAACGATGAGTGTGGTAGTGATTGAACTACAGGAGGCTTTAGCGACGGAATTAGGTAGAACAAACCATGATAGTGGTGCTGATTCCATGTATTCAGTTGCATCGCTCAGTGTGGAGGTAGACACAGAATTCATGCCCTTGGCCAGGTGA 2610 0.4073 MQFDVLGFISLDCGAEAGVNYTEPSLGITYVSDANFINTGVSGKIASNATSTYIERPLLRLRSFPEGKRNCYKIKVTGGNKYLIRTVFLYGNYDGLNISPQFDLLLGPNHLDTVIIDNASSNKIKEIIHIPSLDFVQICLVNTGHGTPFITTIEFRTLKNDTYVTTSGSLETYLRCDLGSDIMYRYPVDAYDRYWFTCMGENWKQLNASIPDDSFNKSDLYQPGSIIMSTAVASGDDSTPLLISWYSEHETDQFYVYMHFTEIQVLPTNQTRQFNITRNGELRVPNFSPRYLAVDTLYTSSAISGKQIKYSLERTENSTLPPIVSAIELYRVIDLQKPQTFQGDVEAIASIKSVYGVKRDWEGDPCAPVDYLWDGLICTYDNDFPRITALNLSSSGLSGKIHPSISNLTMLEKLDLSNNCLNGEVPDFLSQLQHLKILNLEKNNLSSSIPSALLQKSREGSLSLSVGQNPYPCESGQFNEKKKKNTLIPIVASTSGALIILIAVGILWILKRKKSKVEKFTDAVAVNHQSENSQQSTEMDGLFLQRKSQMYSYYDVLQITNNFNRIIGKGGFGTVYLGFIDDTPVAVKMLSPSAVLGYQQFQTEVKLLIRVHHKNLTSLIGYCNEGTNKGLIYEYMAKGNLREHLSGKHNESPLLRWKDRLRVAVDAALGLEYLQNGCKPPIIHRDVKSTNILLDEHFQAKLSDFGLSKVVPDDGRSHVSTVIAGTLGYLDPHYHSSNRLTQKSDVYSFGVVLLEIITNQAVMAGNEETGHISERVNSMISRGDIRAIVDPSLEGNFDINSAWKAVEIAMACVSPNPNERPTMSVVVIELQEALATELGRTNHDSGADSMYSVASLSVEVDTEFMPLAR 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03825 869 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 636 843 - -
Viun5g03825 869 FunFam Leucine-rich repeat receptor-like kinase 343 471 - -
Viun5g03825 869 ProSiteProfiles Protein kinase domain profile. 561 834 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03825 869 PANTHER OS07G0107800 PROTEIN-RELATED 9 834 - -
Viun5g03825 869 Pfam Malectin-like domain 11 332 IPR024788 -
Viun5g03825 869 Gene3D Ribonuclease Inhibitor 345 464 IPR032675 -
Viun5g03825 869 SUPERFAMILY Protein kinase-like (PK-like) 545 829 IPR011009 -
Viun5g03825 869 ProSitePatterns Serine/Threonine protein kinases active-site signature. 682 694 IPR008271 GO:0004672|GO:0006468
Viun5g03825 869 ProSitePatterns Protein kinases ATP-binding region signature. 567 588 IPR017441 GO:0005524
Viun5g03825 869 SMART serkin_6 561 834 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03825 869 Gene3D Phosphorylase Kinase; domain 1 543 635 - -
Viun5g03825 869 SUPERFAMILY L domain-like 370 455 - -
Viun5g03825 869 Pfam Protein tyrosine and serine/threonine kinase 563 828 IPR001245 GO:0004672|GO:0006468
Viun5g03825 869 Gene3D Transferase(Phosphotransferase) domain 1 636 852 - -
Viun5g03825 869 CDD STKc_IRAK 567 832 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03825 Viun-Chr5 46785729 46789738 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03825 4 869 Receptor kinase-like Gene Family AT1G51800 48.233 0.0 792
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Viun5g03825 Malectin_like 2.7e-105 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03825 - - gmx:106794186 1142.49