Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03824 ATGGCATTCAAACATTTGGCACCCTACGCAATGTCGATGAGTTTCTTCGTTATTTTTCTAGGTTGTCTACTTGTTCAAGCCCAGGATCAATCAGGATTTATCAGCATAGATTGCGGAGCTCCAGCAGACACGGACTACACTGAGCCAAAAACAGGCATCAATTACACATCAGATGCCAATTTCATAGACACGGGTGAAAGTGGGACAATAATACCTGAAACCATCAACACTGTCTATCAACGACAGATGATGAATGTGAGAAGCTTCCCCAAAGGAAAAAGGAACTGCTACAAAATAAGCATCACAAGAGGTTCCACTTATCTCATCCGCACCAATTTTTTGTATGGAAATTACGATAAGCTGAATAAGGCACCAAAGTTTGATATTCATCTCGGGGTTAACCGCTGGTATACAGTGACTATAGACAATGCATCCACTCCTCAAGTCAATGAGATCATACATGTACCTTCACTGGATTATCTGCATATCTGTCTCGTTAACACAGGCCATGGCACACCCTTTATATCAGCTATAGAATTAAGGACTTTGAAAAATGCAACTTACGCCCCTGAATTTGGATCATTGGAATATTACAACCGGTGGGATTTAGGTTCAAAGGACAGCTACAGGTACAATGTTGATGTTTACGACCGTTTCTGGTATAGCTATGGCGACAACAAGGATTGGAAACAAATAAATGCTTCTATTGCTGCTGATTCTTTTGATCAGAATGATTACAGACCGCCAGGAATTGTCATGAGTACCGCAGTTACACCAGTAAATGCGAGTGCCCCTTTGGTAATAAGCTGGGAGCCACAAAATCCAACTGAACAATACTATGTTTACATGCACTTCTTCGAGATCGAAGTGCTAGGGAAGAATCAGACAAGAGAATTCAACATCACCCAGAATGGAAGGCCATGGTATCAAAATTTGTCTCCGTTGCCCCAGAGTATCAACACTATATATAGCAGAGCAGGCATCAGTGGGGAAAAAATTGAATATTCACTTGAGAAAGCCAAGAGTTCAAGCCTTCCTCCCATCTTAAATGCCATTGAAATTTACAGAGTGATAAACTTCCAGCAGACAGATACACACCAAGGAGATGTTGATGCGATTGCAAGCATCAAGTCAGTTTATGGAGTGAAAAGAGATTGGCAAGGTGATCCATGCGCCCCTGTAGCCTACTTGTGGGATGGTCTCAATTGTAGTTATCTAGGCAATAAGAACCCAAGAATCACAACTTTGAATTTATCTTCAAGTGAATTGTCCGGAACAATAGATCCTACGATTTCAAATCTCATCATGTTGGAGCAGTTGGATTTATCCAACAATAACTTATACGGCCAAGTTCCTGATTTTCTATCTAGATTACAACACTTGAAGATGATAAACTTTGAGAACAACAACCTCACTGGTTCAATTCCCGAGGCACTAGTTAAAAAATCTAAGGAAGGTTTCCTGTCACTAAGGGTGGGCCAAAATCCATATCTATGTGAATCCGGTCAATGCAACAAGAAGAGGAAGGAAAAGAAGAATATTGTTATTCCCTTATTATCAACCGTTTGTGGGGTTTTGATCCTTCTGATGACTGTGGCAGCTGTATTGTGGACTCTTGAAAGGAGAAAACCCAGAGCTTCGACCGTAGATCAACGTGAGATCACAGAACAAGATGATTCGTTACATCAACTCAAAAAACAGATATATTCATACTCTGATGTAGTTAGAATCACCAACGAATTCAGTACAATTGTTGGTAAAGGTGGGTTTGGAACAGTTTATCTGGGTTATATTGGTGACACTCCCGTGGCAGTGAAAATGCTGTCTCCATCTTCAGTTCATGGTTATCGACAGTTTCAAGCAGAAGTTAAAATTCTAATGAGGGTTCATCATACAAATCTCACCTCCCTTGTTGGATATTGTAATGACGGAGATTATAAGGGTCTCATATATGAGTACATGGCTAACGGAGACTTAAAACAACATCTTTCTGGTAAACACGGCAAATCAAAATTCTTGAGCTGGGAAGACAGGCTTCGTATAGCAGTGGATGCAGCTCTAGGATTGGAGTATCTTCAAACTGGTTGCAAGCCTCCTATAATCCACAGAGACATAAAATCTACAAACATCTTGTTGGATGAAAAGTTCCAAGCAAAATTATCAGATTTTGGTCTATCCAAAATTATCCCAATTGATGGGGGAACTCATGTGTCAACTGTTGTTGCTGGTACTCCCGGTTATCTAGACCCAGAGTACTACATATCCAATAGATTAACACAGAAAAGTGATGTTTATAGCTTTGGAGTTGTTCTTTTGGAAATCATCACTTATCAGCCAGTAATAGCAATGAATGAAGAAAGGAGTCACATCACTGAACGGGTGAGATCACTGATCGAAAAAGGGGATATCAAGGCGATTGTTGACTCAAGGTTAGAAGGAGATTTTGACATTAATTCAGCTTGGAAAGTCGTAGAAATAGCAATGGCATGTGTTTCTTTTAATCCTAGTGAAAGGCCAATGGTGAGGATGATAGTGAGTGAACTAAGGGAGACTTTAGCAACAGAATTAGCTCGAACACAACTCATTGATGCCCATCTTACAACAGATTCTATTGAACCGATGGCCATGAATCTGGACACTGAATTCACTCCTCTGGCGAGGTAA 2664 0.4043 MAFKHLAPYAMSMSFFVIFLGCLLVQAQDQSGFISIDCGAPADTDYTEPKTGINYTSDANFIDTGESGTIIPETINTVYQRQMMNVRSFPKGKRNCYKISITRGSTYLIRTNFLYGNYDKLNKAPKFDIHLGVNRWYTVTIDNASTPQVNEIIHVPSLDYLHICLVNTGHGTPFISAIELRTLKNATYAPEFGSLEYYNRWDLGSKDSYRYNVDVYDRFWYSYGDNKDWKQINASIAADSFDQNDYRPPGIVMSTAVTPVNASAPLVISWEPQNPTEQYYVYMHFFEIEVLGKNQTREFNITQNGRPWYQNLSPLPQSINTIYSRAGISGEKIEYSLEKAKSSSLPPILNAIEIYRVINFQQTDTHQGDVDAIASIKSVYGVKRDWQGDPCAPVAYLWDGLNCSYLGNKNPRITTLNLSSSELSGTIDPTISNLIMLEQLDLSNNNLYGQVPDFLSRLQHLKMINFENNNLTGSIPEALVKKSKEGFLSLRVGQNPYLCESGQCNKKRKEKKNIVIPLLSTVCGVLILLMTVAAVLWTLERRKPRASTVDQREITEQDDSLHQLKKQIYSYSDVVRITNEFSTIVGKGGFGTVYLGYIGDTPVAVKMLSPSSVHGYRQFQAEVKILMRVHHTNLTSLVGYCNDGDYKGLIYEYMANGDLKQHLSGKHGKSKFLSWEDRLRIAVDAALGLEYLQTGCKPPIIHRDIKSTNILLDEKFQAKLSDFGLSKIIPIDGGTHVSTVVAGTPGYLDPEYYISNRLTQKSDVYSFGVVLLEIITYQPVIAMNEERSHITERVRSLIEKGDIKAIVDSRLEGDFDINSAWKVVEIAMACVSFNPSERPMVRMIVSELRETLATELARTQLIDAHLTTDSIEPMAMNLDTEFTPLAR 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03824 887 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 654 861 - -
Viun5g03824 887 CDD STKc_IRAK 585 848 - -
Viun5g03824 887 Pfam Malectin-like domain 36 357 IPR024788 -
Viun5g03824 887 ProSitePatterns Serine/Threonine protein kinases active-site signature. 700 712 IPR008271 GO:0004672|GO:0006468
Viun5g03824 887 FunFam Leucine-rich repeat receptor-like kinase 369 500 - -
Viun5g03824 887 ProSitePatterns Protein kinases ATP-binding region signature. 585 606 IPR017441 GO:0005524
Viun5g03824 887 Gene3D Phosphorylase Kinase; domain 1 562 653 - -
Viun5g03824 887 ProSiteProfiles Protein kinase domain profile. 579 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03824 887 SMART serkin_6 579 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03824 887 PANTHER OS07G0107800 PROTEIN-RELATED 34 852 - -
Viun5g03824 887 Pfam Protein tyrosine and serine/threonine kinase 581 848 IPR001245 GO:0004672|GO:0006468
Viun5g03824 887 Gene3D Ribonuclease Inhibitor 371 487 IPR032675 -
Viun5g03824 887 SUPERFAMILY L domain-like 368 480 - -
Viun5g03824 887 SUPERFAMILY Protein kinase-like (PK-like) 559 848 IPR011009 -
Viun5g03824 887 Gene3D Transferase(Phosphotransferase) domain 1 654 868 - -
Viun5g03824 887 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03824 Viun-Chr5 46776795 46783035 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03824 15 887 Receptor kinase-like Gene Family AT2G19210 47.792 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Viun5g03824 Malectin_like 8.8e-116 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03824 - - gmx:100795183 1431.39