Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03822 ATGGGAATGTCATCGAGTATCCTAGTTACTTTTGTAGGACTTCTCATTCTCATTCCAGCTAAGGGCCAACCAGGATTCATCAGCATAGATTGTGGAGCTCAAGCAGGTGTGAACTATACTGAGCCATCATTAGCCATAAATTACGTTTCGGATGCAGATTTCATAAATACCGGTGTGAGTGGAACAATAACATCTGAAGAGATCAGCAGACACAGTCAACGACAACTGTGGAGGCTACGAAGTTTCCCAGAAGGAAAAAGGAACTGCTACAAAATAAGCGTCACAAGAGGCTCCAAGTATCTCATACGCACTGTTTTTCTGTATGGAAATTATGATGGCAAAAATTTGTTACCACTGTTCGATCTTCTTCTGGGACCTAACCACTGGGATACAGTCACTGTATACAATGCATCCATTGACCAATCCAAGGAGATCATTTATGTACCTTCACTGGATTTCGTACAAATCTGTTTGGTTAACACAGGCAATGGTACACCATTTATAACAACCATAGAATTGAGGACCTTGAAAAATGATACATACGTCACTCAATTCGGATCACTGCAACGTTACTCGCGGTGCGATTTGGGTTCAGACAGAGGCTACAGGTACTGGTCTGATGCTTATGATCGTTTCTGGTTTACCTGTAACTTCAACGAAGATTGGACACGGATAAATGCTTCGATTCCTGGTGATTCTTTTAGTGGGAGAGATGTTTACGAACCGGGAGCTACTATCATGAGCACCGCTGTTGCACCGGCAAATGATAGTGCTCCGTTGGTAATAAGCTGGCAGCCAAAAGATGAAACTGAGCTATTCTATGTGTACATGCACTTCACGGAAATTCAAGTGCTAACCACCAATCAGACAAGACAATTCAACATCAGGAGGAACGGTGATTACTATTTTTCTCCACGGTACCATGTTGTCGATACCATATATACGACGTCAGCCATCAGCGGAAAAGTAATTAAGTATTCACTGGAGAGAACCGAAAATTCAACCCTGCCTCCCATCATTAGTGCCATTGAAATTTACAGAGTAATCGACTTACAGAAACCACAAACATTACAAGCAGATGTTGATGCGATTACTACCATCAAGTCAGTTTATGCACTGACAAGAGATTGGCAAGGTGATCCATGCGCCCCTTTAGCCTTTTTGTGGGATGCTCTCAATTGTTCTTATCACGAAAACGATTCTCCAAGAATCACAACTTTGAATTTATCTTCAAGTGGATTGTATGGAAAGATTGATCCTTCAATTTCAAATCTCACCATGCTGGAGAAATTGGATTTATCAAACAATAGCTTAAACGGTGAAATTCCTGATTTTCTGTCACAACTACGACACTTGAAGATCTTAAACTTAGAGAAGAATAACCTCTCCGGAATAATTCCCTCGGCACTTCTTAGAGGTTCCCTCTCACTAAGTGTGGACCAAAATCCATATCTATGTGAACCTGATCAATGCAACAAGAAGAAAAACAAGAAAAACAATAGCATTGTTACACCCTTGGTAGCATCTGTTGGCGGGGTTTTCGTTCTTCTGGTAGTAGTGGCAGCTATATTGTGGACCGCTAAAAGAAGAAAAGCGAAAGCTTTGACGGTAGAAAAGGATCAGAGTGAGAAATCACTGCAATACACTGAACAAAATGATTCATCACTGCAATTCCAGAAACAAATATATTCGTACTCCGATATCATTAAAATCACCAACAATTTCACTACAATAGTTGGTAAAGGAGGATTTGGAACAGTTTATCTTGGCTATATCGAAGACACTCCAGTTGCAGTGAAAATGCTTTCCCCATCCTCTGTTCGTGGTTATCAACAATTTCAAGCAGAGGTTAAACTTCTTATGAGAGTTCATCACAAATATTTGACCTCCCTTGTTGGTTACTGTAACGAAGGAACCAATAAGGGTCTCGTATACGAGTACATGGCTAATGGAAATTTACAAGAACATCTCTCTGGTAAACGAAGCAAAAGAAATTTCTTCAGCTGGGAAAAGAGACTTCGTATAGCAGTGGATGCAGCTTCAGGATTGGAGTATCTGCAAAATGGTTGTAAACCACCAATATTCCACAGAGACGTAAAATCTACAAACATATTGTTGAATGAACAGCTCCAAGCAAAATTATCTGATTTTGGTTTATCCAAAATTATCCTAACAGATGGGGGAACTCATGTATCAACTGTTATTGCTGGTACTCCTGGTTACCTAGATCCTGAATACTACCTAACCAATAGATTAACAGAAAAGAGCGACGTTTATAGCTTTGGTGTTGTGCTTTTAGAGATAATCACAAGTCAACCAGCGATAATGAAAGAAAAAATCCACATAAGTGAATGGGTTAGGTCCTTGATTGAAAAAGGTGATATCAATGCCATTGTCGACTCAGGGTTGGAAGGAGACTTTGACAGTAACTCAGTTTGGAGAGCGGTGGAAATAGCAACGGCATGTTTATCTCCAAACCCCAACAGAAGGCCAATCATAAGTGTGGTAGTGAATGAACTGAAGGAGTCTTTAGCAATGGAATTTGCTCGAACTGATAATAAAAAAAGTACTCATACAAGTGATTCAGTTGAACTTGTCACCATGAATCTGAATACAGAATCTCTTCCCCAGGCCAGGTAA 2640 0.4019 MGMSSSILVTFVGLLILIPAKGQPGFISIDCGAQAGVNYTEPSLAINYVSDADFINTGVSGTITSEEISRHSQRQLWRLRSFPEGKRNCYKISVTRGSKYLIRTVFLYGNYDGKNLLPLFDLLLGPNHWDTVTVYNASIDQSKEIIYVPSLDFVQICLVNTGNGTPFITTIELRTLKNDTYVTQFGSLQRYSRCDLGSDRGYRYWSDAYDRFWFTCNFNEDWTRINASIPGDSFSGRDVYEPGATIMSTAVAPANDSAPLVISWQPKDETELFYVYMHFTEIQVLTTNQTRQFNIRRNGDYYFSPRYHVVDTIYTTSAISGKVIKYSLERTENSTLPPIISAIEIYRVIDLQKPQTLQADVDAITTIKSVYALTRDWQGDPCAPLAFLWDALNCSYHENDSPRITTLNLSSSGLYGKIDPSISNLTMLEKLDLSNNSLNGEIPDFLSQLRHLKILNLEKNNLSGIIPSALLRGSLSLSVDQNPYLCEPDQCNKKKNKKNNSIVTPLVASVGGVFVLLVVVAAILWTAKRRKAKALTVEKDQSEKSLQYTEQNDSSLQFQKQIYSYSDIIKITNNFTTIVGKGGFGTVYLGYIEDTPVAVKMLSPSSVRGYQQFQAEVKLLMRVHHKYLTSLVGYCNEGTNKGLVYEYMANGNLQEHLSGKRSKRNFFSWEKRLRIAVDAASGLEYLQNGCKPPIFHRDVKSTNILLNEQLQAKLSDFGLSKIILTDGGTHVSTVIAGTPGYLDPEYYLTNRLTEKSDVYSFGVVLLEIITSQPAIMKEKIHISEWVRSLIEKGDINAIVDSGLEGDFDSNSVWRAVEIATACLSPNPNRRPIISVVVNELKESLAMEFARTDNKKSTHTSDSVELVTMNLNTESLPQAR 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03822 879 Pfam Malectin-like domain 29 348 IPR024788 -
Viun5g03822 879 CDD STKc_IRAK 579 842 - -
Viun5g03822 879 SMART serkin_6 573 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03822 879 ProSiteProfiles Protein kinase domain profile. 573 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03822 879 SUPERFAMILY L domain-like 350 470 - -
Viun5g03822 879 SUPERFAMILY Protein kinase-like (PK-like) 553 840 IPR011009 -
Viun5g03822 879 Pfam Leucine rich repeat 402 462 IPR001611 GO:0005515
Viun5g03822 879 Gene3D Ribonuclease Inhibitor 361 487 IPR032675 -
Viun5g03822 879 PANTHER OS07G0107800 PROTEIN-RELATED 27 844 - -
Viun5g03822 879 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 648 853 - -
Viun5g03822 879 ProSitePatterns Serine/Threonine protein kinases active-site signature. 694 706 IPR008271 GO:0004672|GO:0006468
Viun5g03822 879 Gene3D Phosphorylase Kinase; domain 1 555 647 - -
Viun5g03822 879 ProSitePatterns Protein kinases ATP-binding region signature. 579 600 IPR017441 GO:0005524
Viun5g03822 879 Pfam Protein tyrosine and serine/threonine kinase 576 840 IPR001245 GO:0004672|GO:0006468
Viun5g03822 879 Gene3D Transferase(Phosphotransferase) domain 1 648 866 - -
Viun5g03822 879 ProSiteProfiles Leucine-rich repeat profile. 427 449 IPR001611 GO:0005515
Viun5g03822 879 FunFam Leucine-rich repeat receptor-like kinase 357 488 - -
Viun5g03822 879 ProSiteProfiles Leucine-rich repeat profile. 451 472 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03822 Viun-Chr5 46768272 46772527 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03822 1 879 Receptor kinase-like Gene Family AT1G51800 47.508 0.0 809
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Viun5g03822 Malectin_like 4.7e-105 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03822 - - pvu:PHAVU_005G162300g 1294.64