Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03820 ATGGGAACGTTGAGGTGTTTCCTTGTTGGTTTTGTTGGAGTTCTACTTCTTGCCGTTCTAATTCAAGCTCAGGACCAATCAGGATTCATCAGCATAGACTGTGGAGCTCCTGCATATGAGAACTATATTGAGTCTCAAACGGGCATAAATTATACTTCAGATGCAAGTTTAATAAACACTGGTGTGAGTATGTCAGTAGAATCTGATCTCCAAGGAGAGTATCAAAAACAGATGCTGACTCTCAGAAGCTTCCCTGAAGGAAAAAGGAACTGCTACAAAATAGACATCACAAGAGGCTCTAAGTATCTGATCAAGGCTGGTTTTTTGTACGGGAATTATGATGGGCTGAATAAGATACCAAAGTTTGATATTCATCTCGGGGCTAACCGATGGGGTACAGTCAACATAAACAATGGATCATATGAAGTGGACATGGAGATCATACATATACCTTCACAAGATTATGTACAAATCTGTCTGGTTGACACGGGCCATGGAACACCATTTATATCAACCCTAGAATTCAGAACTTTGACAAATGATATTTATGTCACTAAATCTGGATCATTGGAAACTTACATCCGCTGGGATTTAGGTTCAAACCAAGGCTACAGGTACAAGGACGATGTTTACGATCGTTACTGGGGATATGGCAACATCAATAATTGGACACAATTAAGTGTTTCGGTTTCTGCGGATGCTTTAGTCCAGAGCGTATACAGACCGCCAGCTATTGTGATGAGCACTGCAGTTACACCACCAAACGTTAGTGCTCCATTGTTATTACAATGGGAGCCCGATGATCCAACTGACCAATTCTATGTTTACTTGTACTTCATGGAGATTCAAGAGTTAGCGACAAATCAGACAAGAGAATTCAACATCGTGGCAAATGGTAAACTGTGGTATTCAAACTGTTCACCAAAGAATCTTCTTGTCACCACTTTACTGTCCAAGTCAGCCTCCAGTGGGAAAGAAATTATATTTTCTCTGGAAAAAACCAATGACTCAACCCTGCCTCCCATCATCAATGCCCTTGAAATTTACAAAGTAATAGATTTCCCGCAATCAGATACGTTCAAAGGAGACGATGATGCCATTACAACCATCAAATCAATTTATGGGGTGAAAAGAGATTGGCAAGGTGATCCATGTGCCCCAGTAGATTACTTGTGGGATGGTTTGAATTGTAGTTATAGCAAAAACGAGTCTCCAAGAATCACAACTTTGAATTTATCTTCAAGTGGGTTGTCAGGAAAGATAGACCCTTCAATCTCAAACCTCACCATGTTGGAGACTTTGGATTTATCAAACAATAACTTAAACGGTGAAATTCCTGATTTTCTGTCTCAATTACAACATTTAAAGATATTAAACCTGGAGAAGAATAACCTCTCTGGTTCAATTCCCTCAGCACTTGTTGACAAATCTAAGGGAGGTTCTTTGTCACTAAGTGTGGATCCAAATCTCTGTGAATCTGGTCAATGCAACGAGCAGGACAAAGAGAGTGGAAAGAAAAAGAACATTGTTACACCCTTGGTAGCATCTGTTAGTGGGGTTGTGCTCCTTCTCGTTGTCGTGGCAGCTATATTATGGACTCTTAAAAGAAGAAAATTGAAAGCTTTGATAGTAGACAAGGATCAAAGTCAGATCGCACCACAACACACAGAACAAGATGATTTATTACTACCATTCAGGAAACAAATTTATTCGTACTCCGACATCCTTAAAATCACCAACAATTTCAATACAACTCTCGGTAGAGGAGGATTTGGAACTGTTTATCTTGGCCATATTGATGACACTCCTGTTGCAGTGAAAATGCTTTCCTCATCGTCTGTCAAGGGCTTTCAACAATTTCAGGCAGAGGTTAAACTTCTAATGAGAGTTCATCACAAAAATTTAACCTCCCTTGTTGGTTATTGTAATGAAGAAACCAATAAGGGTCTCATATACGAGTACATGGCCAATGGAAACTTACAAGAACATCTCTCTGGTAACCGCAGCAAAGCAAAATTCTTCACCTGGGAAGAAAGACTTCGTATAGCAGTGGATGCAGCCTTAGGTTTGGAGTATCTGCACAATGGTTGCAAGCCATCCATAATCCACAGAGACATAAAATCTACAAACATATTGCTGAATGAACACTTCCAAGCAAAGTTAGCAGATTTTGGTCTGTCCAAAATTATTCCAACTGAAGGGGGAACTCACGTGTCAACTGTTGTTGCCGGTACTCCTGGTTATCTGGACCCTGAGTACTTCACAACAAACAGATTGACAGAAAAGAGTGATGTTTATAGTTTTGGTGTTGTTCTTTTGGAGATAATCACAAATCAAGCAGTGATAACGAGGGGTGAAAAAAGTATTCACATAAGTGACTGGGTGAGATCGTTGGTGGTGAAAGGGGATATGAAGGCCATTGTTGACTCAAGGCTAGAAGGAGATTATGACACCAATTCAGTTTGGAAAGCAGTAGAAATAGCAACAGCATGTGTGTCTTCAAATATGAACAGAAGGCCCGTCACAAGCGAGATAGTGATTGAACTGAAGGAGTCTTTATCAATGGAAGTAGCTAGAACAAAATATAGAGGTAACCATTCATCAGATTCAGGGGTGACCTTGAATCTGAACACAGAATTTATTCCTCAAGCCAGGTAA 2658 0.4003 MGTLRCFLVGFVGVLLLAVLIQAQDQSGFISIDCGAPAYENYIESQTGINYTSDASLINTGVSMSVESDLQGEYQKQMLTLRSFPEGKRNCYKIDITRGSKYLIKAGFLYGNYDGLNKIPKFDIHLGANRWGTVNINNGSYEVDMEIIHIPSQDYVQICLVDTGHGTPFISTLEFRTLTNDIYVTKSGSLETYIRWDLGSNQGYRYKDDVYDRYWGYGNINNWTQLSVSVSADALVQSVYRPPAIVMSTAVTPPNVSAPLLLQWEPDDPTDQFYVYLYFMEIQELATNQTREFNIVANGKLWYSNCSPKNLLVTTLLSKSASSGKEIIFSLEKTNDSTLPPIINALEIYKVIDFPQSDTFKGDDDAITTIKSIYGVKRDWQGDPCAPVDYLWDGLNCSYSKNESPRITTLNLSSSGLSGKIDPSISNLTMLETLDLSNNNLNGEIPDFLSQLQHLKILNLEKNNLSGSIPSALVDKSKGGSLSLSVDPNLCESGQCNEQDKESGKKKNIVTPLVASVSGVVLLLVVVAAILWTLKRRKLKALIVDKDQSQIAPQHTEQDDLLLPFRKQIYSYSDILKITNNFNTTLGRGGFGTVYLGHIDDTPVAVKMLSSSSVKGFQQFQAEVKLLMRVHHKNLTSLVGYCNEETNKGLIYEYMANGNLQEHLSGNRSKAKFFTWEERLRIAVDAALGLEYLHNGCKPSIIHRDIKSTNILLNEHFQAKLADFGLSKIIPTEGGTHVSTVVAGTPGYLDPEYFTTNRLTEKSDVYSFGVVLLEIITNQAVITRGEKSIHISDWVRSLVVKGDMKAIVDSRLEGDYDTNSVWKAVEIATACVSSNMNRRPVTSEIVIELKESLSMEVARTKYRGNHSSDSGVTLNLNTEFIPQAR 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03820 885 CDD STKc_IRAK 586 851 - -
Viun5g03820 885 ProSiteProfiles Leucine-rich repeat profile. 430 452 IPR001611 GO:0005515
Viun5g03820 885 SMART serkin_6 580 823 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03820 885 PANTHER OS07G0107800 PROTEIN-RELATED 30 853 - -
Viun5g03820 885 ProSitePatterns Serine/Threonine protein kinases active-site signature. 701 713 IPR008271 GO:0004672|GO:0006468
Viun5g03820 885 ProSitePatterns Protein kinases ATP-binding region signature. 586 607 IPR017441 GO:0005524
Viun5g03820 885 Gene3D Phosphorylase Kinase; domain 1 567 654 - -
Viun5g03820 885 FunFam Leucine-rich repeat receptor-like protein kinase 552 654 - -
Viun5g03820 885 SUPERFAMILY Protein kinase-like (PK-like) 561 847 IPR011009 -
Viun5g03820 885 Gene3D Ribonuclease Inhibitor 366 481 IPR032675 -
Viun5g03820 885 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 655 862 - -
Viun5g03820 885 Pfam Protein tyrosine and serine/threonine kinase 582 848 IPR001245 GO:0004672|GO:0006468
Viun5g03820 885 FunFam Leucine-rich repeat receptor-like kinase 365 492 - -
Viun5g03820 885 SUPERFAMILY L domain-like 370 473 - -
Viun5g03820 885 Pfam Malectin-like domain 32 351 IPR024788 -
Viun5g03820 885 ProSiteProfiles Protein kinase domain profile. 580 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03820 885 Gene3D Transferase(Phosphotransferase) domain 1 655 870 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03820 Viun-Chr5 46744972 46749487 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03820 1 885 Receptor kinase-like Gene Family AT1G51800 48.724 0.0 861
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Viun5g03820 Malectin_like 1.6e-113 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03820 - - gmx:100785345 1294.26