Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03817 ATGGACGGTCTAAGTTGGGATTCCTCATCACAACTTGTTGGTAACATACCGATGTTATGGAGCAGTCAATCTCAAGATCTTGAAGGAGAGTATCACCATTCCATGCCACACCTTTGTTCAAGTGTTCTCAATCAAACAGGTTATCCATATCCCAGTTCTGAAAAAGCGAGGGAGATGGTTCACCCATCCACTTCCGAGATAATGAGTATTTTGCCGAATATGAATCTGTCACAAAGAACAGCAACCATGGCAGTGAAATCAGGAGCAGCTGGAGCCAGTTGGGGAGAAGCTTTAACATCCCAATCATGCCCGTCCCTTTCCATGAACCAAACTACCAATTATGTAGCAGATTTCAACATGGCCCACCAGCAACACCACCTTATCAGCGGCACGCAAAACGTCAAGGGTACCTGCTCTCTCGAGTCACTTGATTGCTTGCTTTCAGCGACTAAGAATGGCAACACAGACACGTCTCTCGAAGACGATGGGATTTCCATGATGATTTTATCTGACTGCAGAAACTTGTGTAACTTCAGTTATGGCAGTGCAGTCTCCTCTGGTGAATCTGAGAGCAATGCTTCCAATGCCAGAAACAGTGACATGAGGTATCCATCGGTGAATGAGCTGGATGAAACAGCGTCTCAAAGCTTCTCTGATCAATATATCAGTCAAGGAAGAGTTATAGATTCTGAAGTTATTTGCAGAAAAGGGAGCAATTCATGCTTCAGCGTTGCTCAGAGTTCTTTTGCCAGCGAAGGTGGTTTCAGGCTTATCTCAGAGACTTCACCAAAGTCCAAGAGACCCAGATGGGACAGGCATCATCCTGGTTCATCAAATATCAACTTCCAGCAGCCAAATTCATCTGTGTCACCTTCCTTTGAAGAACCTGATCCAGAGGCCATAGCACAAATGAAGGAGATGATATATAGGGCTGCAGCTTTTCGACCGGTGAACTTGGGATTGGAAGTGGTGGAAAAGCCAAAAAGGAAGAATGTTAGGATATCAACTGATCCACAGACTGTGGCTGCCAGAGAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAACTACCTCAAGTTTCTCAGAGCACAAGTCAAAGCACTAGAAAATTTAGGTAACAAGCTTGACACCATGAATTCTCCTCCTAACATAGCCTTCTCTTTCAACCCTTCTTTTCCATTACAAACACATTTCCCCGTCCAAAACCCTAGCACCAACACCCACATCCAACATTCCAAGGGTCATCGGAAATGA 1320 0.4485 MDGLSWDSSSQLVGNIPMLWSSQSQDLEGEYHHSMPHLCSSVLNQTGYPYPSSEKAREMVHPSTSEIMSILPNMNLSQRTATMAVKSGAAGASWGEALTSQSCPSLSMNQTTNYVADFNMAHQQHHLISGTQNVKGTCSLESLDCLLSATKNGNTDTSLEDDGISMMILSDCRNLCNFSYGSAVSSGESESNASNARNSDMRYPSVNELDETASQSFSDQYISQGRVIDSEVICRKGSNSCFSVAQSSFASEGGFRLISETSPKSKRPRWDRHHPGSSNINFQQPNSSVSPSFEEPDPEAIAQMKEMIYRAAAFRPVNLGLEVVEKPKRKNVRISTDPQTVAARERRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRAQVKALENLGNKLDTMNSPPNIAFSFNPSFPLQTHFPVQNPSTNTHIQHSKGHRK 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03817 439 Pfam Helix-loop-helix DNA-binding domain 344 383 IPR011598 GO:0046983
Viun5g03817 439 Gene3D - 339 403 IPR036638 GO:0046983
Viun5g03817 439 Coils Coil 373 393 - -
Viun5g03817 439 MobiDBLite consensus disorder prediction 260 296 - -
Viun5g03817 439 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 334 383 IPR011598 GO:0046983
Viun5g03817 439 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 153 431 IPR045843 GO:0003700|GO:0006355
Viun5g03817 439 MobiDBLite consensus disorder prediction 276 293 - -
Viun5g03817 439 SMART finulus 340 389 IPR011598 GO:0046983
Viun5g03817 439 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 339 399 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03817 Viun-Chr5 46733312 46735923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03817 94 430 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.740 3.06e-83 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun5g03817 HLH 3.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03817 - - gmx:100793830 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03817 5 46733312 46735923 Viun5g03817 5 46733312 46735923 ECH
Viun5g03817 5 46733312 46735923 Viun10g02583 10 39546213 39548026 PCT