Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03801 ATGCGTTTTGATTTACCATTTGATATGGACGCCGAAGCGGACTCAAGTCAAAACCCTACTCCAAGACACAAATGTTCGGCATGCTATAAACAATTCAAGAAGAAAGAGCATCTAATTGAGCACATGAAAACCTCGAACCATTCCGTCCATCAGCCTGCGTGTGGAGTCTGTCAAAAACACTGCAAATCTTTTGAGTCTCTGAGGGAACATCTTACTGGTCCTTTGCCAAAAGGAGTTTGTTCAAAGACTTTCTCTCAACGGGGCTGTCAACTTTGCTTGGTACTATTTGATAGTCCCGGGTCTCTCATTGCTCACAGACAAACATGTCGCTTGTCTGCTCCTACTCGTCTTGGAACTAAAGATCTGACCTACATAGATTCCCAATTTGACTGTCAAGATTCTTCTGATGAAAACCATGCTGGCAGGGGCACTGGAGGAACAGTTGCAATGGACTGTGAAATGGTTGGTGGTGGAAGTGATGGTTCTCTGGAACTTTGTGCAAGAGTATGTTTGGTTGATGAAGATGAGAACTTAATCTTTCATACATATGTAAGACCTTTAATGACTGTTACTAATTACAGATATGATATAACTGGGTTGACAGAAGAACATCTCAGAAATGCGATGCCCCTTTATGAAGTTCGAGAAAAGGTATTGAAAATACTATACAATGGAGAATCCATTGGCAAAGTTCGACTAAATGGTGGAAGGGCCAAGCTTCTTGTGGGGCATGACTTAGCACACGATTTAGATTGCTTGAACATGAATTATCCTGATCATATGCTAAGAGACACTGCAAAGTACCGTCCGTTGATGAAGACAAACTTGGTCAGCCATTCGCTCAAGTATCTCACCCGAACATATCTTGGTTATGATATCCAATCCGGCACTCATGACCCGTATGAAGATTGTATTTCTGTGATGAGACTATACAAAAGAATTCGAGCTCAAATTCATCCAGAGGAAGAAGAAGACCATGGAACATCGACTCCGAGTAACAGGATTGTTGGCATGCCTGATTGCTGGAGATCCAAGGAACTTGACAACCTCACTCCAGATCAACTCTATGCCATGTCAAGATCGGATTACAAGTGTTGGTGCTTGGATTTGAGGTCAAAATTGCCAACCTGA 1131 0.4235 MRFDLPFDMDAEADSSQNPTPRHKCSACYKQFKKKEHLIEHMKTSNHSVHQPACGVCQKHCKSFESLREHLTGPLPKGVCSKTFSQRGCQLCLVLFDSPGSLIAHRQTCRLSAPTRLGTKDLTYIDSQFDCQDSSDENHAGRGTGGTVAMDCEMVGGGSDGSLELCARVCLVDEDENLIFHTYVRPLMTVTNYRYDITGLTEEHLRNAMPLYEVREKVLKILYNGESIGKVRLNGGRAKLLVGHDLAHDLDCLNMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGTHDPYEDCISVMRLYKRIRAQIHPEEEEDHGTSTPSNRIVGMPDCWRSKELDNLTPDQLYAMSRSDYKCWCLDLRSKLPT 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03801 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 52 IPR013087 -
Viun5g03801 376 ProSitePatterns Zinc finger C2H2 type domain signature. 25 47 IPR013087 -
Viun5g03801 376 CDD REX4_like 148 312 IPR037431 GO:0006364|GO:0008408
Viun5g03801 376 Pfam Exonuclease 148 311 IPR013520 -
Viun5g03801 376 MobiDBLite consensus disorder prediction 1 22 - -
Viun5g03801 376 Gene3D Classic Zinc Finger 8 73 - -
Viun5g03801 376 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 25 325 IPR047021 GO:0004527
Viun5g03801 376 SUPERFAMILY Ribonuclease H-like 148 318 IPR012337 -
Viun5g03801 376 SMART exoiiiendus 146 320 IPR013520 -
Viun5g03801 376 Gene3D - 145 328 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03801 Viun-Chr5 46648420 46652422 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03801 9 369 C2H2 Transcription Factor Family AT3G27970 50.964 1.37e-134 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03801 K18327 - gmx:100805841 659.062