Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03799 ATGGAGGAAATGTCTAAGTTCCTCATCCATGGAACAATTGAAGCTACCATCTTCAATGCCACACCTTACTCACCTTTGTTTCCCTTCAATTGTGTACATACAAAAGGAAAGCCTGCATATGTGTCCATTAGGATAGGAAAACAGAAGGTGGCGAGAACGACACAAGAACGTGAACGTGTGTGGAACCAAACCTTTCAGATTCAGTGTGCTCATCCAGAAGATTCAACTATCACCATTACGCTGAAGACATCATGCTTCATTTTGGGGAAATTCCACATGCAGGCCAAGCGGTTGAAGGAAGAGAGTTTGATCAATGGAGTATTCCCTCTCCTCATGGAAAATGGAAAACCAAATCCACAACTAAAGTTAAGATTTATGTTGTGGTTCAAGCCAGCAGAAATGGAACCAAGTTGGAGAAAGATACTAAGCAATGGGGAGTTTCAAGGGCTTAGGGATGCTACTTTCCCTCAAAGGTCCAACTGCGAGGTTAAACTCTATCATGATGCTCACCATTCATCTACCTTCAACCCTCCTTTTGACCTTTGTGGCGCTCCAATGAAGCTGTGGGAAGATGTCTATAAAGCCATTGAAGGTGCAAAATACTTGATTTATATTGCAGGCTGGTCTTTAAATCCCAAGATGGTTCTGGTTAGAGATCCTCAAACAGAAATCCCTCATGCTAGGGAGATAAATCTGGGTGAGTTATTGAAGAAGAAAGCAGAAGAAGGAGTGGCTGTGAGGGTTATGATTTGGGATGACGAAACATCTTTGCCTTTGATTAAGAACAAAGGTGTGATGAACACTCATGATGAGGAAGCTTTTGCATACTTCAAACACACTAAGGTAATATGCAGAAAGTGTCCCAGGTTACACCACAAGTTCCCCACACTCTTTGCTCACCATCAGAAGACCATAACTGTGGACACCAGAACACCCTGCTCTGTTCATGCCAGAGAAATTATGAGCTTTTTGGGTGGTTTAGATTTGTGTGGTGGCCGCTATGACACAGAAAAACACTCACTGTTTCAGACACTTGCTGAGGAATCCGATTACCATGACTTCTACCAAACAAACATTGCAAAAGCTAGCCTCAAGAAAGGAGGACCAAGAGAGCCTTGGCATGATGCTCATGCTTGTGTTATTGGTGAGGCTGCATGGGATGTGTTAAGCAATTTTGAGCAAAGATGGACAAAGCAGTGCGATCCTTCTCTTCTAGTTCCTGCCACCACTTTAGAAAATCTCATTCCCACATACTCAAACACTCCAACAGAAAGGAATTGGAAAGTCCAAGTATATAGGTCAATTGACCATGTATCTGCTAGCCAGTTGTTTAGAAGGTTAACTGTGGAGAGAAGCATCCAAGAAGCTTATGTTGAAGCTATTAGGCGTGCTGATAGGTTTGTATACATTGAAAACCAGTATTTTGTTGGAGGGTGTCACTTGTGGCAAGAAGATAGGCACAGTGGATGCAGCAATCTGATTCCGGTTGAGATTGCACTCAAGGTGGTTAGTAAGATCAAAGCAAGAGAGAGGTTTGCAGTGTACATAGTCATACCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAACCAGTTCAAGATATACTTCACTGGACCAGAGAAACAATGACAATGATGTATCGGTTGATTGGAGAAGCAATAACAGAAAGTGGAGAACCAGGGCATCCAAGAGATTACTTGAATTTCTTCTGCCTTGCAAATAGGGAAAAGAAGGAAAAGGAGGAGTTTCTTCCACCACTTTCTCCTCATCCTGCAACACAATACTGGAATGCACAAAAGAATAGGAGGTTCCCCATTTATGTTCACTCAAAGGTGATGATAGTGGACGACATATACATACTAATAGGATCAGCCAATGTGAACCAACGATCCATGGATGGAGAAAGGGACACTGAGATTGCCATAGGGGCATACCAGTTTGAAGATGGAGTTGATCACCTCATAAACCGTGGTGATATTCATGCCTACAGAATGTCACTGTGGTATGAGCACACAGGAAGTGCTGAGGAACTGTTCTTAGAGCCAGAAAGTTTGGCATGTGTGCAGAGAATGAGGTCAATAGGGGATGACATGTGGGAAATGTACAGCAGTGAAGAAATTGTGGACATGGAAGGTGTGCACCTTGTAAGGTACCCTGTGAAAATAACTCAAGAAGGGTATGTGGAGGACCCAGATGATGGTGGTGATCATTTTCCTGATACAAAATCTCCTGTGAGGGGGAAGAGATCAAAATTCTTAAACCCTGTCTTTACCACTTAA 2277 0.4295 MEEMSKFLIHGTIEATIFNATPYSPLFPFNCVHTKGKPAYVSIRIGKQKVARTTQERERVWNQTFQIQCAHPEDSTITITLKTSCFILGKFHMQAKRLKEESLINGVFPLLMENGKPNPQLKLRFMLWFKPAEMEPSWRKILSNGEFQGLRDATFPQRSNCEVKLYHDAHHSSTFNPPFDLCGAPMKLWEDVYKAIEGAKYLIYIAGWSLNPKMVLVRDPQTEIPHAREINLGELLKKKAEEGVAVRVMIWDDETSLPLIKNKGVMNTHDEEAFAYFKHTKVICRKCPRLHHKFPTLFAHHQKTITVDTRTPCSVHAREIMSFLGGLDLCGGRYDTEKHSLFQTLAEESDYHDFYQTNIAKASLKKGGPREPWHDAHACVIGEAAWDVLSNFEQRWTKQCDPSLLVPATTLENLIPTYSNTPTERNWKVQVYRSIDHVSASQLFRRLTVERSIQEAYVEAIRRADRFVYIENQYFVGGCHLWQEDRHSGCSNLIPVEIALKVVSKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRETMTMMYRLIGEAITESGEPGHPRDYLNFFCLANREKKEKEEFLPPLSPHPATQYWNAQKNRRFPIYVHSKVMIVDDIYILIGSANVNQRSMDGERDTEIAIGAYQFEDGVDHLINRGDIHAYRMSLWYEHTGSAEELFLEPESLACVQRMRSIGDDMWEMYSSEEIVDMEGVHLVRYPVKITQEGYVEDPDDGGDHFPDTKSPVRGKRSKFLNPVFTT 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03799 758 SUPERFAMILY Phospholipase D/nuclease 146 408 - -
Viun5g03799 758 Pfam Phospholipase D C terminal 675 747 IPR024632 -
Viun5g03799 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 603 630 IPR001736 GO:0003824
Viun5g03799 758 SUPERFAMILY Phospholipase D/nuclease 423 687 - -
Viun5g03799 758 PANTHER PHOSPHOLIPASE D 8 742 IPR015679 -
Viun5g03799 758 Pfam C2 domain 39 110 IPR000008 -
Viun5g03799 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 296 333 IPR001736 GO:0003824
Viun5g03799 758 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 38 132 IPR035892 -
Viun5g03799 758 Pfam Phospholipase D Active site motif 297 333 IPR001736 GO:0003824
Viun5g03799 758 PIRSF PLD_plant 2 758 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Viun5g03799 758 Gene3D Endonuclease Chain A 446 658 - -
Viun5g03799 758 SMART pld_4 296 333 IPR001736 GO:0003824
Viun5g03799 758 SMART pld_4 603 630 IPR001736 GO:0003824
Viun5g03799 758 Gene3D Endonuclease Chain A 179 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03799 Viun-Chr5 46636247 46639228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03799 31 758 Phospholipase D Gene Family (Wang group) AT1G55180 62.064 0.0 955
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03799 K01115 - gmx:100807431 1392.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03799 5 46636247 46639228 Viun5g03799 5 46636247 46639228 ECH
Viun5g03799 5 46636247 46639228 Viun10g02541 10 39289064 39292241 PCT