Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03782 ATGGAAGGTGGCACGAGTTCCTCAAGGAGCACCACACAGGCTTGTGCTGCTTGTAAGTACCAACGCAGGAAATGCGGACCCACCTGCATTCTCGCACCTTTCTTTCCTCATTATCGCCAAAAACAGTTCCTTCACGCTCACAGGCTTTTCGGAGTTGGCAAAATCATCAACATGATCAAGCCTCTTGACCCTGTTAACAGAAACTCAGCCATCAACACCATTATCTATGAGTCTGATATGAGAGCCAGAAACCCTGTTGGAGGCTGCTTAAGCTTCATTCTTCACTTGCAATCCCTCATCGTCTCTGCTGAATCCGAACTCCAATTTCTCCTTCAACACCTTGCCTTCTTCAGAGCACAACTTCTTCATTCCACTGCCACACCACAACCACCACCACCACCACCTTCCTCCTCCTCCTACGACCCTTATCTTCCACAAATGTCACTTCAAGAATCAAAAGATCCGTCACAGCTTCACCCACAACAACTTGGAAATGATCCCTTGCAGCTTCAACAGCAAGAACAACCCAAAGATCCGTGCTTTAATCACAACTCGTCTTTTAATTACTATGCATTGCAAGAAGATATGAGCGTGTCCGACATCGACAACTTAGTACATTTCTTTCCGTGGTTGCCGCCGCAGGATGACACCACCAGCCAATATCGAGATCCCTGA 675 0.4726 MEGGTSSSRSTTQACAACKYQRRKCGPTCILAPFFPHYRQKQFLHAHRLFGVGKIINMIKPLDPVNRNSAINTIIYESDMRARNPVGGCLSFILHLQSLIVSAESELQFLLQHLAFFRAQLLHSTATPQPPPPPPSSSSYDPYLPQMSLQESKDPSQLHPQQLGNDPLQLQQQEQPKDPCFNHNSSFNYYALQEDMSVSDIDNLVHFFPWLPPQDDTTSQYRDP 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03782 224 MobiDBLite consensus disorder prediction 126 140 - -
Viun5g03782 224 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Viun5g03782 224 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 156 - -
Viun5g03782 224 MobiDBLite consensus disorder prediction 125 164 - -
Viun5g03782 224 MobiDBLite consensus disorder prediction 141 164 - -
Viun5g03782 224 Pfam Lateral organ boundaries (LOB) domain 14 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03782 Viun-Chr5 46497663 46498337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03782 13 118 AS2 family AT3G13850 55.660 2.50e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun5g03782 LOB 9e-32 No_clan