Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03779 ATGTCTAATTTGACTTCTGCATCCGGTGAAGCTAGTGCTTCTTCAGGCAACAGAACCGAAATTGGTTCTGATTACTCGCAGCAATACTTTGCTAGCCCACCAACTCAAACCCAGGCTCCACCAAAGAAGAGAAACCTTCCAGGCAACCCAGACCCGGAGGCTGAAGTTGTGGCGTTGTCTCCAAAGACTCTCTTGGCCACAAACAGGTTCATCTGTGAGATCTGCAACAAAGGGTTTCAAAGAGATCAGAATCTGCAACTTCACAGAAGAGGGCACAATTTACCATGGAAGCTGAAGCAGAGAACGAGCAAGGAGATAAGGAAGAAGGTTTATGTGTGCCCAGAAGCAAGTTGCGTCCACCACGACCCTTCAAGGGCCCTGGGGGACCTAACTGGCATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAGTATGCTGTTCAATCAGACTGGAAAGCTCACTCAAAGACCTGTGGCACAAGAGAGTACAGATGTGACTGTGGAACTCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCCTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGATCTGTGACAGGCATGGACATTGCCATAGGCATTCCCAGCAACTCAGCTTCAACTCCAACAACACCTGCAGCGGGAGTAGGAGTAGTCATCCCTTCATCCTCTCATCATCATCAAGATATCATCCATGGTGGTAACAATTTCCCATTGAAGAAAGAGCAACAAGGTTTCATGCCCCCATGGCTTGGACAACCACCCTCCACCGTTGATCTCTCCTCCTCCTCCTCCTCGTTCTTCTCTCAGCAGGATCATGTGAGCGGTCTCCATGAAAACCCTAACCCTAGAGGTGGTGGTGGTGGTGGAAGTGGTCCCACTTTCCCTCCCTACCCAACAGCACCTTCCCCTCCTCACATGTCAGCCACAGCGTTGCTGCAGAAAGCAGCCCAAATGGGAGCTACCATGACCAAAACTGGCTCCATGATTAGGACCCACCAACAGGCTCACGTGTCTGCTGACTCTTTGAATTTGTCCTCACGTGACGACCAGATGACCCCCACTTCCAACACCACCACTCCCCATGGCTTGGTACCTTTCGGGAATAAAGCTGTTCCTGCTTCTGGTGTTGGTGTTGGCGTTGGTGTTTCTTCATCACTCCTTCACCATGTTATCAACTCTTTCTCTTCCCCTTTTGAAGGGACTTCTTTTGAGGACCCTTTCAATGCTGCTGTCACCAAAACAACCGCCGCTGATGACCGTGCCGGTGGTGGTGCCGCCGGCGGAGGAAATTACAATGAGGCCATGACCAGAGATTTCTTGGGTCTTCGACCCCTCTCTCACACTGATTTTCTCAACATCGCTGGCATGGGAAACTGCATGAACTCCCAACATAACCAAACCCAAAACCCTTGGCAAGGTTAG 1464 0.5048 MSNLTSASGEASASSGNRTEIGSDYSQQYFASPPTQTQAPPKKXRNLPGNPDPEAEVVALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARSVTGMDIAIGIPSNSASTPTTPAAGVGVVIPSSSHHHQDIIHGGNNFPLKKEQQGFMPPWLGQPPSTVDLSSSSSSFFSQQDHVSGLHENPNPRGGGGGGSGPTFPPYPTAPSPPHMSATALLQKAAQMGATMTKTGSMIRTHQQAHVSADSLNLSSRDDQMTPTSNTTTPHGLVPFGNKAVPASGVGVGVGVSSSLLHHVINSFSSPFEGTSFEDPFNAAVTKTTAADDRAGGGAAGGGNYNEAMTRDFLGLRPLSHTDFLNIAGMGNCMNSQHNQTQNPWQG 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03779 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Viun5g03779 488 SMART c2h2final6 71 93 IPR013087 -
Viun5g03779 488 SMART c2h2final6 112 142 IPR013087 -
Viun5g03779 488 SMART c2h2final6 147 167 IPR013087 -
Viun5g03779 488 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Viun5g03779 488 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Viun5g03779 488 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Viun5g03779 488 FunFam protein indeterminate-domain 12-like 50 118 - -
Viun5g03779 488 Gene3D Classic Zinc Finger 50 121 - -
Viun5g03779 488 MobiDBLite consensus disorder prediction 241 321 - -
Viun5g03779 488 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 477 IPR031140 -
Viun5g03779 488 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Viun5g03779 488 MobiDBLite consensus disorder prediction 1 43 - -
Viun5g03779 488 Gene3D Classic Zinc Finger 125 204 - -
Viun5g03779 488 MobiDBLite consensus disorder prediction 269 291 - -
Viun5g03779 488 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03779 Viun-Chr5 46473600 46476327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03779 1 477 IDZ Gene Family AT1G55110 47.590 3.32e-128 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun5g03779 zf-C2H2_jaz 7.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03779 K25870 - gmx:100820609 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03779 5 46473600 46476327 Viun10g02519 10 39140869 39144166 PCT