Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03765 ATGGGGCATCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGGGGACTATGGTCTCCTGAAGAAGATGAAAAACTCATCAACTACATCACAACCTATGGCCACGGTTGCTGGAGTTCAGTTCCAAAACTTGCAGGTAATTCATTTTATTCATCATATTTCTGCCTGCAGAGGTGTGGAAAGAGCTGCAGATTGAGATGGATAAACTATCTGAGACCTGATTTGAAACGGGGAAGCTTTTCTCCTCAAGAAGCAGCACTCATTATAGAACTTCATAGTATCCTTGGCAACAGGTGGGCTCAGATAGCGAAGCACCTACCTGGAAGAACAGATAATGAGGTGAAGAACTTTTGGAATTCAAGCATAAAGAAGAAGCTGCTTTCTCATGATGTTGTTCCTTCTTTAGCCACATTTTCTGATATTCACGGTCTTGCCAATGCTTCCATGGAAAGTTTCTTCCCTTTATCTGACAACACTATCCTAAACTCCCATCATCACTTAGACCACCTATACCTTCCCATCATCCCAACCCCAACAATCCTACAAGCCTTTGATCATCTCAACAATGATATCAAGATTGACATAAACAATTATCATAACAACAATAATAATAATCATCATCATAATTCCAATTTCCTACATTTTCAGAATCCAATGCCAGAAACAGTGCCACCATCATCCAACAACAACATTATTCCATCTTTGTTTGAATTAGATACATGGTCCTCCTTCGGGTGCGTACCCTTTCATCTTAATCCAAATCAACAAAGTCAAACAATGATCACCAAAACTGCTGATACCACCACCCCACACTTAATTCTTGAGAAACTCATCAATCCAAGTACATGGCAGCACCAAGCTGTGGAACCGACCGTTGATAATCTTGTTCCAAAAGTGTGTGAGAGCGTCGAGGATTATGTCTGCAGCATTCCGTTTTCTTCTTCTGCTGCCAATTCACAACATCATCAACACGAGGATGCTGTCGCCTGCTACACACCAGGTATTTGTCCACAAGATCAAATTGCAGTACCCAATCAAGTGGAGTACATTGATGCCATCATCATGTCATCGTTGCCATCCTCAACAACATCATCTTCATCAGTATCACTCTATCAAGCAGACAAATAG 1125 0.4133 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGNSFYSSYFCLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDVVPSLATFSDIHGLANASMESFFPLSDNTILNSHHHLDHLYLPIIPTPTILQAFDHLNNDIKIDINNYHNNNNNNHHHNSNFLHFQNPMPETVPPSSNNNIIPSLFELDTWSSFGCVPFHLNPNQQSQTMITKTADTTTPHLILEKLINPSTWQHQAVEPTVDNLVPKVCESVEDYVCSIPFSSSAANSQHHQHEDAVACYTPGICPQDQIAVPNQVEYIDAIIMSSLPSSTTSSSSVSLYQADK 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03765 374 PANTHER MYB DOMAIN PROTEIN 55 1 288 - -
Viun5g03765 374 Pfam Myb-like DNA-binding domain 76 118 IPR001005 -
Viun5g03765 374 Pfam Myb-like DNA-binding domain 14 70 IPR001005 -
Viun5g03765 374 CDD SANT 17 70 IPR001005 -
Viun5g03765 374 ProSiteProfiles Myb-like domain profile. 9 70 IPR001005 -
Viun5g03765 374 Gene3D - 78 125 - -
Viun5g03765 374 CDD SANT 78 118 IPR001005 -
Viun5g03765 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Viun5g03765 374 SUPERFAMILY Homeodomain-like 11 117 IPR009057 -
Viun5g03765 374 FunFam Myb transcription factor 11 76 - -
Viun5g03765 374 SMART sant 13 72 IPR001005 -
Viun5g03765 374 SMART sant 75 123 IPR001005 -
Viun5g03765 374 Gene3D - 11 76 - -
Viun5g03765 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 70 IPR017930 -
Viun5g03765 374 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Viun5g03765 374 FunFam Myb transcription factor 78 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03765 Viun-Chr5 46408763 46410759 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03765 1 127 MYB Transcription Factor Family AT3G13890 89.764 2.80e-78 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun5g03765 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03765 K09422 - gmx:102662609 550.051