Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03750 ATGGGTTCAAATGCAGCAGAAGAAGAATCTACCTTGATCGCCATTGATACCGATCAGAACAGCCAACACGCTGTCAAATGGGCTGTGGAACATCTCTTCAAGAACAACTCTCCCTGCACCCTCCTTCACGTCACAACTAAGAACTTACATCACAATGATTTGGAGGTTTCCCCTAAGCAAGGTCGTCCACCAACAGAAGAAGAATTGCAACACATTTTTCTTCCCTTTCGAGGATTCTGTGCTCGAAAAGGGATCGCAGTTAAAGAGTTAGTTCTGCAAGACACTGACGTAGTAAAAGCGCTTACTAATTACATAACTCAGAACTCTATCAACAATGTTGTTGTTGGTGCTTCTCGCTCCAACGCTCTTCTAAGGAAATTTAAAGATGTAGATGTGCCTACAAGCTTAGTAAGATGTTTGCCACAATCTTGCATGGTGCATATCATATCAAAAAGAAAAGTGCAGAATATTCGACCTCATTCTCATCACAATAGTAGTATCGCACCATCAAAATCTCTAAAAGCCATCAAGGAAAGTTTTCGGTCCAAAGATTTAAACAGAAGATCACTCCATATTAAATTTTGGCATAGATCAAACAACGATTGGGTATCTCCAATAACACCACACAAGAACAATGCAGAGACTGCTTCTCCAAAGCCACTTGATGAAGAACGGGAAGCAATGGAAAGTAAAAAGGGAAAGCAAATCGAAACAAAAGTTATGCATGAAAAAGAAGAAGAGATGAATAAACCATCAAACGAAATTGCACCCAACAAAGTTCCATTTAAGAGATACAACATTAAAGAAATTGAAGTAGCAACTAATTACTTCGACAATGCCCTCAAAATTGGTGAAGGTTCGTACGGACCCGTTTTCAAAGGGGTGCTTGATGACATCGATGTTGCTGTGAAGGCTCTCAGACCAGACATAACCCAAGGGGAGAAGCAGTTCCAACAAGAGGTTGTTGTTTTGAGCAAAATAAGACATTCAAACATGGTTACACTTCTGGGTGCATGTCCGGAGTATGGATGCCTTGTGTATGAGTACATGGAAAATGGAAGTTTAGAAGATCGTCTCTTCCAGAAAGATAACACACCAGCGATTCCATGGAAAGTGAGATTCAGAATAGCATCAGAAATTGCGACAGGTCTTCTTTTCCTTCATCAGACAAAGCCTGAGCCTATTGTGCACCGAGACCTGAAACCAGCGAATATTTTGTTGGACTGTGACTATGGTAGCAAGATCACTGATGTGGGTTTGGCAAGGCTTGTTCCACCTGCAATACCCAACAAAACCACTCAGTACCATAAAACAACTGCAGCTGGTACATTTTGCTACATTGATCCAGAGTATCAGCAAACAGGGCTATTGGGAGTTAAATCAGACATTTATTCACTGGGTGTGATGCTGTTGCAGATTATAACTGGAAAGAGTCCTATGGGTGTGGGTCACTTGGTTCAAGAGGCTATAGAAAAGGGTAGATTTTCAGAGGTTCTTGATCCGAATGTGATGGATTGGCCTGTTGAGGAGACTTTGTCGTATGCGAGGTTGGCTTTGAAGTGTTGTGAGATGAGAAGACGAGATAGACCAGATCTTGCTTCTGTCATTTTGCCGGAGTTGATTCGGCTAAGAAATTTAGGATCTCACAAATAA 1653 0.4144 MGSNAAEEESTLIAIDTDQNSQHAVKWAVEHLFKNNSPCTLLHVTTKNLHHNDLEVSPKQGRPPTEEELQHIFLPFRGFCARKGIAVKELVLQDTDVVKALTNYITQNSINNVVVGASRSNALLRKFKDVDVPTSLVRCLPQSCMVHIISKRKVQNIRPHSHHNSSIAPSKSLKAIKESFRSKDLNRRSLHIKFWHRSNNDWVSPITPHKNNAETASPKPLDEEREAMESKKGKQIETKVMHEKEEEMNKPSNEIAPNKVPFKRYNIKEIEVATNYFDNALKIGEGSYGPVFKGVLDDIDVAVKALRPDITQGEKQFQQEVVVLSKIRHSNMVTLLGACPEYGCLVYEYMENGSLEDRLFQKDNTPAIPWKVRFRIASEIATGLLFLHQTKPEPIVHRDLKPANILLDCDYGSKITDVGLARLVPPAIPNKTTQYHKTTAAGTFCYIDPEYQQTGLLGVKSDIYSLGVMLLQIITGKSPMGVGHLVQEAIEKGRFSEVLDPNVMDWPVEETLSYARLALKCCEMRRRDRPDLASVILPELIRLRNLGSHK 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03750 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 395 407 IPR008271 GO:0004672|GO:0006468
Viun5g03750 550 Gene3D Transferase(Phosphotransferase) domain 1 350 546 - -
Viun5g03750 550 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 12 127 - -
Viun5g03750 550 CDD STK_N 13 151 - -
Viun5g03750 550 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 250 349 - -
Viun5g03750 550 Gene3D Phosphorylase Kinase; domain 1 232 349 - -
Viun5g03750 550 ProSiteProfiles Protein kinase domain profile. 277 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03750 550 MobiDBLite consensus disorder prediction 205 233 - -
Viun5g03750 550 Gene3D HUPs 9 146 IPR014729 -
Viun5g03750 550 SUPERFAMILY Protein kinase-like (PK-like) 257 536 IPR011009 -
Viun5g03750 550 MobiDBLite consensus disorder prediction 216 233 - -
Viun5g03750 550 Pfam Protein kinase domain 281 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03750 550 SMART serkin_6 277 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03750 550 PANTHER OS02G0152300 PROTEIN 224 548 - -
Viun5g03750 550 FunFam Os07g0541700 protein 350 442 - -
Viun5g03750 550 Pfam Universal stress protein family 12 132 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03750 Viun-Chr5 46297189 46300362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03750 228 547 Receptor kinase-like Gene Family AT5G12000 64.688 1.63e-151 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Viun5g03750 Pkinase 5.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03750 - - vra:106760620 927.161