Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03747 ATGGAAGCGCGAAGTCGCTCCGTGGAAGACATATTCGAGGATTTCAAGGGACGAAGAGCAGGCATCATCAAAGCCCTCACCACCGATGTTGAAGATTTCTACAGCCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATATGCATTACCCAGTGAGCAGTGGGAAGTAAATTTACCTGTTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTCCTGGGCATTAACTTTGCTAGGGATGGCATGCAGGAAAAAGACTGGCTATCTTTAGTTGCCGTTCACAGTGATACATGGTTGCTTGCCCTTGCCTTTTATTTTGGAGCCAGATTTGGATTTGATAAAACTGACAGGAAACGACTATTCAGTATGATCAATGAACTACCAACAATATTTGAAGTTGTTACTGGTGGTGGAGCAAAGAAGCCAGTTAAAGAGAAGTCTTCAGTTTCGAACAACAGTGGAAACAAATCTAAGCCTAACTCTAAAGTGCGGGTTTCCGAAACCCAGGGCAGACAGTCAAAGGCATTGTTACAACCAAAAGATGAGGATGAAGGAGCAGAAGAGCAAGAGGAAGATGAACACGGAGAGACCTTGTGTGGGGCATGTGGTGAGAATTATGGGACTGATGAGTTCTGGATTTGCTGTGACATCTGCGAGAAGTGGTTCCATGGCAAATGCGTGAAGATCACCCCTGCTAGGGCAGAGCACATCAAGCAATACAAGTGTCCATCGTGCAGTAACAAGAGAGCTCGCTAA 753 0.4555 MEARSRSVEDIFEDFKGRRAGIIKALTTDVEDFYSQCDPEKENLCLYALPSEQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLALAFYFGARFGFDKTDRKRLFSMINELPTIFEVVTGGGAKKPVKEKSSVSNNSGNKSKPNSKVRVSETQGRQSKALLQPKDEDEGAEEQEEDEHGETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03747 250 MobiDBLite consensus disorder prediction 144 174 - -
Viun5g03747 250 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Viun5g03747 250 CDD PHD_AL_plant 197 247 IPR044104 -
Viun5g03747 250 PANTHER CPG BINDING PROTEIN 5 250 IPR045104 GO:0006355|GO:0042393
Viun5g03747 250 Pfam Alfin 7 135 IPR021998 GO:0006355|GO:0042393
Viun5g03747 250 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Viun5g03747 250 FunFam PHD finger alfin-like protein 190 246 - -
Viun5g03747 250 Pfam PHD-finger 198 247 IPR019787 -
Viun5g03747 250 MobiDBLite consensus disorder prediction 139 191 - -
Viun5g03747 250 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Viun5g03747 250 SMART PHD_3 197 245 IPR001965 -
Viun5g03747 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 246 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03747 Viun-Chr5 46282001 46286563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03747 6 250 Alfin-like Transcription Factor Family AT3G42790 73.061 1.62e-121 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Viun5g03747 Alfin 1.1e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03747 K26274 - gmx:100170696 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02450 10 38644237 38648994 Viun5g03747 5 46282001 46286563 ECH
Viun5g03747 5 46282001 46286563 Viun5g03747 5 46282001 46286563 ECH
Viun5g03747 5 46282001 46286563 Viun10g02450 10 38644237 38648994 PCT