Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03746 ATGGCTTATTCGGCATCAGAAAATTCTTGTCAAATTCCCTGGCATGCTACTTCATATACCATATTGATGAGTATTTTCTCTGCTCTTTGCATAATAGTTGAAATGTCTGTTCAGCATAGTTCTATTGGTTCAACACTTGGCACAACCGAGGGATGTGTCATCAGGTCATTTATGCAGAATCAGGATTTCACCTTCCCTCCTCCACTACTGGATCAAAGCCAAACACTTGCTCACTATGCTGATCCAGGCTATAGCAATCTTATGTCTTCTTCATATGGTCCACAATCCAAGACAGTGGAAGAAACTGCTCCTATTCGAATTCCTCTGCAATTGGACGTTAAAGAAGAACCCATATACGTGAATTCAAAGCAGTACCATGCTATTCTGAGAAGAAGACTCTATCGAGCAAAACTTGAAGTACAAAACAAACCCATCAAGTATCGAAAACCTTATCTTCACGAGTCTCGCCATCTACATGCAGTGAAGAGAGCAAGAGGTGCTGGTGGACGCTTTCTCAACACTAAAAAGCTTCAACAATCAACTCGTAAACATGGAAATACTGCAGAATCGAACATGCATCAAATAGAAAACTACAGAGATGGTGATAATGCAACATATGCATCTAACAGTGGTGCAAGAAATATGCAGAATTATACATCTGATAAGGGTGGTGGTGGCACCACTCAGCACCCTCTTTTTGTCTACATGTGA 711 0.4079 MAYSASENSCQIPWHATSYTILMSIFSALCIIVEMSVQHSSIGSTLGTTEGCVIRSFMQNQDFTFPPPLLDQSQTLAHYADPGYSNLMSSSYGPQSKTVEETAPIRIPLQLDVKEEPIYVNSKQYHAILRRRLYRAKLEVQNKPIKYRKPYLHESRHLHAVKRARGAGGRFLNTKKLQQSTRKHGNTAESNMHQIENYRDGDNATYASNSGARNMQNYTSDKGGGGTTQHPLFVYM 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03746 236 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 58 219 IPR001289 GO:0003700|GO:0006355
Viun5g03746 236 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 116 171 IPR001289 GO:0003700|GO:0006355
Viun5g03746 236 ProSitePatterns NF-YA/HAP2 subunit signature. 119 139 IPR018362 GO:0003677|GO:0016602
Viun5g03746 236 ProSiteProfiles NF-YA/HAP2 family profile. 114 174 IPR001289 GO:0003700|GO:0006355
Viun5g03746 236 SMART cbf3 113 174 IPR001289 GO:0003700|GO:0006355
Viun5g03746 236 Gene3D - 114 175 - -
Viun5g03746 236 PRINTS CCAAT-binding transcription factor subunit B signature 117 139 IPR001289 GO:0003700|GO:0006355
Viun5g03746 236 PRINTS CCAAT-binding transcription factor subunit B signature 148 171 IPR001289 GO:0003700|GO:0006355
Viun5g03746 236 MobiDBLite consensus disorder prediction 176 231 - -
Viun5g03746 236 MobiDBLite consensus disorder prediction 176 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03746 Viun-Chr5 46278499 46280772 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03746 78 205 CCAAT-HAP2 Transcription Factor Family AT1G17590 53.571 3.62e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Viun5g03746 CBFB_NFYA 3.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03746 K08064 - gmx:100803893 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03746 5 46278499 46280772 Viun5g03746 5 46278499 46280772 ECH
Viun5g03746 5 46278499 46280772 Viun10g02447 10 38636467 38640754 PCT