Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03745 ATGAATTGTTCATCATGGGGGACTTCAGAATCCAGAAGTTTGAGCTTAGAAGTGGATTTTCTGCCACAACAATGCCACAGGAGCAAAACATTGAGCTTTCAATTCCAAGAACAGGATTCATCTTCGATTCATTCGGGTCAATCTTCTACCGTTGAAATGTCTGTTCAGCATAGTTCTATTGGTTCAACACTTGGCACAACCGAGGGATGTGTCATCAGGTCATTTATGCAGAATCAGGATTTCACCTTCCCTCCTCCACTACTGGATCAAAGCCAAACACTTGCTCACTATGCTGATCCAGGCTATAGCAATCTTATGTCTTCTTCATATGGTCCACAATCCAAGACAGTGGAAGAAACTGCTCCTATTCGAATTCCTCTGCAATTGGACGTTAAAGAAGAACCCATATACGTGAATTCAAAGCAGTACCATGCTATTCTGAGAAGAAGACTCTATCGAGCAAAACTTGAAGTACAAAACAAACCCATCAAGTATCGAAAACCTTATCTTCACGAGTCTCGCCATCTACATGCAGTGAAGAGAGCAAGAGGTGCTGGTGGACGCTTTCTCAACACTAAAAAGCTTCAACAATCAACTCGTAAACATGGAAATACTGCAGAATCGAACATGCATCAAATAGAAAACTACAGAGATGGTGATAATGCAACATATGCATCTAACAGTGGTGCAAGAAATATGCAGAATTATACATCTGATAAGGGTGGTGGTGGCACCACTCAGCACCCTCTTTTTGTCTACATGTGA 765 0.4157 MNCSSWGTSESRSLSLEVDFLPQQCHRSKTLSFQFQEQDSSSIHSGQSSTVEMSVQHSSIGSTLGTTEGCVIRSFMQNQDFTFPPPLLDQSQTLAHYADPGYSNLMSSSYGPQSKTVEETAPIRIPLQLDVKEEPIYVNSKQYHAILRRRLYRAKLEVQNKPIKYRKPYLHESRHLHAVKRARGAGGRFLNTKKLQQSTRKHGNTAESNMHQIENYRDGDNATYASNSGARNMQNYTSDKGGGGTTQHPLFVYM 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03745 254 PRINTS CCAAT-binding transcription factor subunit B signature 135 157 IPR001289 GO:0003700|GO:0006355
Viun5g03745 254 PRINTS CCAAT-binding transcription factor subunit B signature 166 189 IPR001289 GO:0003700|GO:0006355
Viun5g03745 254 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 134 189 IPR001289 GO:0003700|GO:0006355
Viun5g03745 254 ProSitePatterns NF-YA/HAP2 subunit signature. 137 157 IPR018362 GO:0003677|GO:0016602
Viun5g03745 254 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 24 237 IPR001289 GO:0003700|GO:0006355
Viun5g03745 254 Gene3D - 132 193 - -
Viun5g03745 254 SMART cbf3 131 192 IPR001289 GO:0003700|GO:0006355
Viun5g03745 254 MobiDBLite consensus disorder prediction 194 244 - -
Viun5g03745 254 ProSiteProfiles NF-YA/HAP2 family profile. 132 192 IPR001289 GO:0003700|GO:0006355
Viun5g03745 254 MobiDBLite consensus disorder prediction 194 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03745 Viun-Chr5 46277841 46280772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03745 7 223 CCAAT-HAP2 Transcription Factor Family AT1G17590 40.083 1.49e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Viun5g03745 CBFB_NFYA 3.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03745 K08064 - gmx:100803893 327.405