Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03730 ATGGAATACCCCTTTTCCTCCAAGGAAAGAGAAATTGGGGATTGGCAATCTTCGGGAACTCAGTTGGTGGGATCAACATCATTAGATGGCAGAATGAGCAATTCAATATCAGAGGATATGCCCAATAGCTTCTCAGAGCTCATGAACTTTGATACTTATGCTGGTTTGTGCAACAGCCCATCCATATCTGATCAGATTTTGGCTAATGAGCTTCCGTCATTTGCTTCATTACCCTATTCATTGCCTGATGGATTCAACCTAGTCCAACAGAACAATGGGCAATGCTATATGTCAGGAGCTGGCAGAAATGACAACGATATGGAAAGCCCCCGCATTTATGGGGAGAAAGTTGCCTGTCAGCAAGTGGACACCCTTCTTGGTTTCTTAAATGATGAAAATGAAGCAAATAAGTTGAATTCTAAGTTAAAAATTAATGACTCTTCTCAACATCTGAACAACTCTGATGCAGGAAATTATATAATGTCCAGGCCACCTGCTTTATCACTTGATGAGAGAATGCTGAGGGCTTTGTCCTTCTTTAAGGAATCAGCTGGAGGGGGAATATTGGCACAAGTTTGGGTACCCATAAAGGATGGTGACCAATTCATCTTAAGCACGAGTGAACAACCTTATTTGCTAGATCAAATGCTTGCAGGGTACCGTGAAGTGTCCAGGACATTTACATTTTCTGCAGAAGGAAAATCTGGTTGTTTCCTAGGACTTCCTGGTCGTGTATTTACCTCCAAAGTTCATGAGTGGACGTCAAATGTTGGTTATTACAGTATGAATGAGTACCTAAGGTTCGAGCATGCAATTAATCACCATGTTCGTGGATCAATTGCATTTCCCATTTTTGATTTGCACTCGGAATTTCTATGTTGTGCTGTACTGGAAATTGTGACTACAAAGGAAAAGCCAGATTTCAACAGAGAATTTGAAATTGTTTCCCGTGCACTCCAGAATGTAAATTTAAGCACTGCCAAGCCTCTTCGATGTCTTCCCCAGTGTCTTTCAAACAACAAAAAGGCTACATTGACTGAGATAGTTGATGTGTTACGTTCTGTCTGTCATGCACATAGATTACCGCTGGCACTTACATGGCTTCCCTGTTGTTACACTGAGGGATCAAGAGGTGAAGCTACAAGGATACGAATTAAAGGGTGCCATTCAACTATTAGTAGAAAAAGCATACTCTGCCTTGAAGAATCTGCTTGCTATATAACTGATAGAGCACTGGCAGGATTTGTCCGTGCATGCACAGAACATCATATTGAGGAAGGGAAAGGTATAGCTGGGAAAGCTCTTCGATCAAATCATCCTTTCTTTTGTCCTGATGTGAAGGCATATGATATTAGTGAATATCCACTTGTCCATCATGCACGCAAGTATAATTTGAATGCTGCAGTTGCAATTAGGCTAAGGAGTACTTATACCAATCATGATGATTACATATTGGAATTCTTTCTGCCTGTTAACATGACTGGGGGTTCAGAGCAGCAACTTTTATTAGACAACCTCTCAGGTACCATGCAGAGAATTTGTAGTAGTTTGAGGACTGTGTCAGATGCTGAATCATCAAGAATAGAAAGTTCACAAGAAGGATTTGAAAAGAAAAATGCCCCCTATTTTTCTCCTTTGTCACGTCAGAACTCTGGAGTACCATTAATAAATGGTGACTATCATTCTGTCCCAAAGATGTCATTGACAGCAACTAACGCTGGAGACAATGAAATTGAGCCTTCTGCTATTCAGGGAAGAAATGGAGCAAAAAGACAGGTCCAGAAAAATAGAAGTACATCAGAGAAGAATGTTACCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAACATCGGTGTTTGCCCGACAACTCTGAAAAGGATATGTAGGCAACATGGAATCTCAAGGTGGCCGTCCCGCAAGATTAATAAAGTGAATCGATCACTGAAGAAGATACAGACTGTGCTCGACTCTGTCCGAGGAGTGGAGGGAGGGTTGAAGTTTGATCCCTCTATGGGGGCATTCGTGGCAAGAGGGTCAATCATCCAGGAAACTGATGCACATAAAAGTCTTCTGTTTCCTGAGAAAAGTATTATAAAAGACCCTGCACCTATTACACAAGAAGCAGTCCCGGTACCATCTGCACCTTGTAATGAAGTTGAGAATTTTTCATTTAAGATGGAGGAAAAATTGAAGAAAACCAATGCTTTTTCCGTTGGCTGTTGTGAAGATTCAAAATCAGTGGCAATTGACGATGGGTCATGCGAAATGGAAAGCCTTTGCACCAAGGTGCAGAATTGTCCTGAGCAAGCTTGTTTGGGCTCTGTTCTTGCAAAAGAACAAGATAAATGGACTCGGAACAAGAGTGGTTTGAGAGTAGAAAACTTTAAATGCAGTATTCTTGGTCAGAGTTCAAATTCCTTGATTGGTAAGGAGATGGACATTGGTGTAGATGGGGATGCTGGGGTTGTTGAACCTAACCACCCCAGTTCCTCAAGCTTGACAGACTCATCTAATGACTCTGGTTCAATGATGCATAGCATTTCATCAGGTTCTCAGAGCTTCAAGAACCAGAATCAGTCCAAAGTTAAGTCAACCATCGTTGATAGTGGGTCAAAACTAATTGTCAAAGCTATCTATAGAGAAGACACCGTTCGATTCAAGTTCGATCGATCTGCTGGTTGTTTCAGGTTATATGAAGAAGTTGCAGCAAGATTCAAACTACAAACTGGGTCATTCCAGCTGAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTGAATGATGCTGATTTGCAAGAGTGTCTAGACATATTGGATGATATTGGTACATGCAGCGTCAGGTTTCTTGTCCGTGATTTGCCTTCCATTTTAAGCAGTTCTGGCAGTAGTAATAGCTACTTGGGAGGCAGCTCATAG 2940 0.4139 MEYPFSSKEREIGDWQSSGTQLVGSTSLDGRMSNSISEDMPNSFSELMNFDTYAGLCNSPSISDQILANELPSFASLPYSLPDGFNLVQQNNGQCYMSGAGRNDNDMESPRIYGEKVACQQVDTLLGFLNDENEANKLNSKLKINDSSQHLNNSDAGNYIMSRPPALSLDERMLRALSFFKESAGGGILAQVWVPIKDGDQFILSTSEQPYLLDQMLAGYREVSRTFTFSAEGKSGCFLGLPGRVFTSKVHEWTSNVGYYSMNEYLRFEHAINHHVRGSIAFPIFDLHSEFLCCAVLEIVTTKEKPDFNREFEIVSRALQNVNLSTAKPLRCLPQCLSNNKKATLTEIVDVLRSVCHAHRLPLALTWLPCCYTEGSRGEATRIRIKGCHSTISRKSILCLEESACYITDRALAGFVRACTEHHIEEGKGIAGKALRSNHPFFCPDVKAYDISEYPLVHHARKYNLNAAVAIRLRSTYTNHDDYILEFFLPVNMTGGSEQQLLLDNLSGTMQRICSSLRTVSDAESSRIESSQEGFEKKNAPYFSPLSRQNSGVPLINGDYHSVPKMSLTATNAGDNEIEPSAIQGRNGAKRQVQKNRSTSEKNVTLSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVRGVEGGLKFDPSMGAFVARGSIIQETDAHKSLLFPEKSIIKDPAPITQEAVPVPSAPCNEVENFSFKMEEKLKKTNAFSVGCCEDSKSVAIDDGSCEMESLCTKVQNCPEQACLGSVLAKEQDKWTRNKSGLRVENFKCSILGQSSNSLIGKEMDIGVDGDAGVVEPNHPSSSSLTDSSNDSGSMMHSISSGSQSFKNQNQSKVKSTIVDSGSKLIVKAIYREDTVRFKFDRSAGCFRLYEEVAARFKLQTGSFQLKYLDDEEEWVMLVNDADLQECLDILDDIGTCSVRFLVRDLPSILSSSGSSNSYLGGSS 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03730 979 MobiDBLite consensus disorder prediction 11 36 - -
Viun5g03730 979 PANTHER PROTEIN NLP8 140 971 IPR045012 GO:0003700
Viun5g03730 979 Pfam PB1 domain 882 960 IPR000270 GO:0005515
Viun5g03730 979 CDD PB1_NLP 880 960 IPR034891 -
Viun5g03730 979 ProSiteProfiles RWP-RK domain profile. 585 671 IPR003035 -
Viun5g03730 979 MobiDBLite consensus disorder prediction 576 600 - -
Viun5g03730 979 Pfam RWP-RK domain 603 651 IPR003035 -
Viun5g03730 979 SUPERFAMILY CAD & PB1 domains 874 963 - -
Viun5g03730 979 Gene3D - 876 957 - -
Viun5g03730 979 MobiDBLite consensus disorder prediction 825 863 - -
Viun5g03730 979 SMART PB1_new 879 961 IPR000270 GO:0005515
Viun5g03730 979 MobiDBLite consensus disorder prediction 1 36 - -
Viun5g03730 979 ProSiteProfiles PB1 domain profile. 879 961 IPR000270 GO:0005515
Viun5g03730 979 MobiDBLite consensus disorder prediction 832 863 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03730 Viun-Chr5 46242014 46249322 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03730 1 976 NLP Transcription Factor Family AT2G43500 48.783 0.0 804
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Viun5g03730 PB1 1.9e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03730 - - gmx:100804426 1547.33