Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03717 ATGCACTTAAGTCCTTACACCACCACTCCAAAGAAGCCATCACCACATTCCAACACCCACCACCACCACCACCGCCACCACAACAACCACCACCACCACCATAGCAACAACATTGTTGATGAGGCTGCAGCGTTAGATAACACCAACATGCATCGCAGCAACCAGAGCCACACATCCACAAGTCGTTCTTCGGACTCGAGTGAGCCGAACGAAGATGGCAAATGGGCACCGAAGCTTCTGAGAGAGTGTGCAAAAGCGATATCAGAGAGAGATTCCACGAAAACGCACCATCTTTTGTGGATGCTGAACGAGCTTGCTTCGCCCTACGGTGACTGCGATCAAAAGCTCGCGTCTTACTTCTTGCAAGCCTTGTTCTGCAGAGCCACCGAGTCCGGCGAGAGATGCTACAAGACGCTCTCCTCCGTGGCGGAGAAGAACCACACGTTCGATTCCGCGAGGAGGTTGATTCTCAAGTTCCAGGAGGTGAGCCCTTGGACCACGTTCGGACACGTGGCCTCCAACGGGGCCATCTTGGAGGCCTTGGAGGGAGAGCCCAAGCTCCACATCATCGATCTCAGCAACACGCTTTGCACGCAGTGGCCCACTTTGTTGGAGGCTCTGGCCACGCGAAACGACGAAACGCCGCACCTGAAACTCACCGTGGTGGCGCTTGCGGGGTCGGTGATGAAGGAGGTTGGTCAACGGATGGAGAAGTTCGCGAGGCTCATGGGCGTGCCCTTTGAATTCAACGTGATCACCGGCTTGAGGGATCTCACGAAAGAAGGGTTGGGGGTTCAGGAGGACGAAGCCGTCGCCGTGAACTGCGTCGGGGCGCTGAGAAGAGTGGAGGTTGAAGAGAGGGAAAACTTGATTCGCGTGTTGAAGTCTCTTGGCCCTAAAGTGGTGACCGTGGTGGAGGAAGAAGCTGATTTTTGCAGCTCCGGGGAGGATTTCGTAAAGTGCTTCGAGGAGTGTCTGAAGTTCTACTCTCTCTATTTCGAGATGTTGGAGGAGAGTTTTCCTCCGACCAGCAACGAGAGGTTGATGTTGGAGAGGGAGTGTTCGAGGAGCATAGTTAGGGTTTTGGCATGCTGTGGTGGTGGTGGTGGCGGTGATGACATGGAAGACGACGGAGAAGAGTTTGAGTGTTGTGAGAGGAGGGAGAGAGGAACACAGTGGTGTGAGAGGCTGAGGAATGCATTTTCGCCGGTGGGTTTCAGCGATGATGTGGTTGATGATGTGAAAGCGTTGCTGAAGAGGTACCAACCAGGGTGGTCACTGGTGGTTTCTCAGGGTGATGATCATCTCTCAGGGATTTACTTGACATGGAAGGAGGAACCAGTGGTTTGGGCTTCAGCATGGAAACCCTAG 1371 0.5412 MHLSPYTTTPKKPSPHSNTHHHHHRHHNNHHHHHSNNIVDEAAALDNTNMHRSNQSHTSTSRSSDSSEPNEDGKWAPKLLRECAKAISERDSTKTHHLLWMLNELASPYGDCDQKLASYFLQALFCRATESGERCYKTLSSVAEKNHTFDSARRLILKFQEVSPWTTFGHVASNGAILEALEGEPKLHIIDLSNTLCTQWPTLLEALATRNDETPHLKLTVVALAGSVMKEVGQRMEKFARLMGVPFEFNVITGLRDLTKEGLGVQEDEAVAVNCVGALRRVEVEERENLIRVLKSLGPKVVTVVEEEADFCSSGEDFVKCFEECLKFYSLYFEMLEESFPPTSNERLMLERECSRSIVRVLACCGGGGGGDDMEDDGEEFECCERRERGTQWCERLRNAFSPVGFSDDVVDDVKALLKRYQPGWSLVVSQGDDHLSGIYLTWKEEPVVWASAWKP 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03717 456 MobiDBLite consensus disorder prediction 51 66 - -
Viun5g03717 456 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 63 445 IPR005202 -
Viun5g03717 456 Pfam GRAS domain family 78 455 IPR005202 -
Viun5g03717 456 MobiDBLite consensus disorder prediction 1 34 - -
Viun5g03717 456 MobiDBLite consensus disorder prediction 51 75 - -
Viun5g03717 456 ProSiteProfiles GRAS family profile. 67 455 IPR005202 -
Viun5g03717 456 MobiDBLite consensus disorder prediction 15 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03717 Viun-Chr5 46166098 46168233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03717 51 456 GRAS Transcription Factor Family AT4G37650 50.930 4.64e-143 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun5g03717 GRAS 3e-94 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03717 - - gmx:100818806 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02402 10 38321676 38323663 Viun5g03717 5 46166098 46168233 PCT