Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03716 ATGCCGAAACAGATTCATGAGATTAAAGACTTCCTCCTCACTGCGAGGAGGAAGGATGCACGCTCTGTGAAAATCAAGAGGAGCAAAGATGTGGTAAAGTTCAAGGTTCGCTGCTCCAGGTACCTGTACACCCTATGTGTGTTTGACTCTGAGAAGGCTGATAAGTTGAAGCAATCCCTTCCTCCAGGTTTAAGTGTGCAAGATGTGTGA 210 0.4619 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSRYLYTLCVFDSEKADKLKQSLPPGLSVQDV 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03716 69 Pfam Ribosomal L38e protein family 2 69 IPR002675 GO:0003735|GO:0005840|GO:0006412
Viun5g03716 69 FunFam 60S ribosomal protein L38 1 69 - -
Viun5g03716 69 PANTHER 60S RIBOSOMAL PROTEIN L38 1 69 IPR002675 GO:0003735|GO:0005840|GO:0006412
Viun5g03716 69 Gene3D - 1 69 IPR038464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03716 Viun-Chr5 46159455 46161046 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03716 1 69 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 95.652 1.58e-44 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03716 K02923 - gmx:100806030 138.272
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03716 5 46159455 46161046 Viun5g03716 5 46159455 46161046 ECH