Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03706 ATGCCGCCTCCTACAAAATCCATGGAAAGCGAGGAGTGGGGAACTCCAACCAACAACCTCTGGGTTGGAAATCTGCCGCCGGATGTCGCCGATTCCGATCTCATGGAACTCTTCGCTCCGTACGGTTCTCTCGACACACTCATTTCATATTCCTCACGCACCTTCGCTTTCGTGTTGTTCGGACGCGTCGAAGAGGCCAAGGCGGCGAAAACAAACTTACAAGGAGCGTCGTTGCGCGGGTTTCAAATCAGAATCGAATTTGCAATACCGGCAAGGCCGTGTAAACAGCTATGGGTGGGTGGTGTTAGCCACAACGTAGCGATGGAGGATTTGGAAGCGGAGTTTCGTAAATTCGGTAAGATTGAGGATTTCAAGTTCTTCAGAGACCGTCGTACTGCGTGTGTTGAGTTTCTCAATTTGGATGATGCTACGCGGGCCATGAAAGTAATGAACGGGAAGCGATTAGGTGGCGGCCATATTTGTGTGGACTTCCTTAGGTCCCAATCTATGAATAGAGATTTTTTTGTTGACCAAGGGCAGTTTCAGGCTAGACCTCAGCATTTGCAACCTTCAATGGGGAGGAATAGTCCACCCAGTAACATTTTGTGGATAGGTTTTCCTCCTTCGTTTCAAATTGATGAACAAATGCTCCACAATGCCATGATTTTGTTTGGTGAAATTGAGAGAATAAAGAGTTTTCCTTCTAGACATTATTCATTTGTTGAGTTTAGAAGCATTGATGAAGCTCGCCGTGCCAAAGAGGGCCTTCAGGGACGGCTTTTTAATGATCCTAGAATAATGATTATGTATTCAAGCAGTGATACAACGCCTGGCAAAGATTACCCTGGATTTTATCCTGGAAGTAAAGGGCCTTTACCTGATGGATTAGTAAACGAGCTTCCATTTCGACCACCACAAACGGATGTATTTGGTCAAAATCGTCCTATTGTTCCAAATAATTTTCCGGGGCAATTGCCACCCGGTGGTATAAGTGGACCTAATGTCTCACTGCGACCTTTTGTTCCTCAAGGTCTTGAACCTCTTAACAATGGTCCTGATTTTAATGAGATGAGCACACTTCACAAATTTCAAGATGGTAGCTCAAAAATGGGTCCAAGCTGGAAAAGGCCATCTCCTCCTGCCCCTGGGATGCTTTCTTCTCCTATGCCTGGTATTAGGCCCAGCTCTGGTCCATGGGATGTACTTGACGCAAACCAATTTTCAAGAGATTCTAAACGTTCAAGGATAGATGATGCTTTGCTAATTGGTGATGCTTCATTTCCTTTAAGAAATATTGATGACCGCGGATTAAGATTAGAACAACAATTTGCAATCGATCCAATTACTGATGGAGGTGGTTCTGGTCCAAAGAGTCACCTTGGTCCAGTCGGCACCAGGATCACTTCTGGAGTTCCTGGTTCTGTCCAATCTGATATTGATCATATATGGCGTGGAGTTATTGCAAAAGGGGGAACTCCTGTTTGTCGTGCTAGATGTGTGCCTATTGGAAAGGGGATAGGCACTGAGATTCCTGATGTTGTAGATTGTGCTGCTAGGACTGGATTGGATATGTTAACGAAACACTATGCTGATGCAATTGGCTTTGAAATTGTTTTCTTTCTCCCTGATAGTGAAGAGGATTTTGCTTCATACACTGAATTCCTTCGTTACCTTAAAGCAAAAAACCGTGCTGGTGTTGCCAAGTTTATTGATAACACCACCTTATTTTTGGTACCTCCTTCTGATTTCTTGACCAAAGTTTTGAAAGTCACAGGACCTGAACGATTATACGGTGTGGTTCTTAAGTTTCCACTAGTTCCAAGTAGCACATCTATGCAACAAGCAATGCATTTTCCTTCGCCCTCTACTCAGTATGTGCAACAGATTCCCCCTTCACAACCAGAGTATGGTTCAATCTCTGTAAAGGAGCAACCAATTTTACCAATGGAATATAACAGATTGTTGCATGATGATTCTAAGCGTCTGCCAAAACCACATCATCTTGCTACCAGTGTCACTCCTCCAGCTCATTCTGTTCCTCCTGATTATTCTTCTACTTATACTGCTTCTGCATCCCAAGCGGGAGTTACATTGACCCCTGAACTTATTGCAACTTTAACTTCGTTTCTCCCTTCAACTATACAATCATCAACAGCTGGTGGCACAATGACAGTGGTTGGTCCCTCTACTATGAAGCCACCTTTTCCATCTGTTGCATCTAATGATGGAAGTCAATCTCATTTGTGGAAACAAGATCAGCAAACCACGGATCAACCTAGTTATCCTCCTCAACAGTTTGGGAGTATTAATAATGCTCAATATCATCCTTATCCACCTGCATCTTCTACTGGGCACCCTGCTCAAGTTGTCTCTGGCAGTGCTCATTTCCATGATACGGCTTCAAGTCTTCAGCAGCTAGGTGCTGTTTCGACATCTACATCCTTGAGTAATTTCATTATACCTCCTCAAAATGGACAGGAAGCTGTTCCCCCTCAAGTCAGTCAACAGTATCAGGTGGAAGTGCCCCACAGCAATGAGAAAGGCTATGGAGTAGTTCAGGGAACGGATCCCTCGGCTCTATATAGTTCTAAGGCATTCCAACAACCTAATAATCTTATTCACTCATCCAACCAAGTTTCCAATGCTGCTTCACAGCAACACATGAATTCAGAGCCCCCAAATCAGCAACTTCAAGCTGCTGGCCAGGGAATCTCTGAATTGGAGGCTGATAAGAACCAGAGGTACCACTCAACACTACAGTTTGCTGCAAACCTTCTCTTCCAAATACAGCAACAGCAAACCCAAGGAGAGCATGGACCTGGAAATCAACAATAA 2835 0.4423 MPPPTKSMESEEWGTPTNNLWVGNLPPDVADSDLMELFAPYGSLDTLISYSSRTFAFVLFGRVEEAKAAKTNLQGASLRGFQIRIEFAIPARPCKQLWVGGVSHNVAMEDLEAEFRKFGKIEDFKFFRDRRTACVEFLNLDDATRAMKVMNGKRLGGGHICVDFLRSQSMNRDFFVDQGQFQARPQHLQPSMGRNSPPSNILWIGFPPSFQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSIDEARRAKEGLQGRLFNDPRIMIMYSSSDTTPGKDYPGFYPGSKGPLPDGLVNELPFRPPQTDVFGQNRPIVPNNFPGQLPPGGISGPNVSLRPFVPQGLEPLNNGPDFNEMSTLHKFQDGSSKMGPSWKRPSPPAPGMLSSPMPGIRPSSGPWDVLDANQFSRDSKRSRIDDALLIGDASFPLRNIDDRGLRLEQQFAIDPITDGGGSGPKSHLGPVGTRITSGVPGSVQSDIDHIWRGVIAKGGTPVCRARCVPIGKGIGTEIPDVVDCAARTGLDMLTKHYADAIGFEIVFFLPDSEEDFASYTEFLRYLKAKNRAGVAKFIDNTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFPLVPSSTSMQQAMHFPSPSTQYVQQIPPSQPEYGSISVKEQPILPMEYNRLLHDDSKRLPKPHHLATSVTPPAHSVPPDYSSTYTASASQAGVTLTPELIATLTSFLPSTIQSSTAGGTMTVVGPSTMKPPFPSVASNDGSQSHLWKQDQQTTDQPSYPPQQFGSINNAQYHPYPPASSTGHPAQVVSGSAHFHDTASSLQQLGAVSTSTSLSNFIIPPQNGQEAVPPQVSQQYQVEVPHSNEKGYGVVQGTDPSALYSSKAFQQPNNLIHSSNQVSNAASQQHMNSEPPNQQLQAAGQGISELEADKNQRYHSTLQFAANLLFQIQQQQTQGEHGPGNQQ 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03706 944 CDD RRM_SF 97 163 - -
Viun5g03706 944 MobiDBLite consensus disorder prediction 365 400 - -
Viun5g03706 944 Gene3D - 178 277 IPR012677 -
Viun5g03706 944 SMART rrm1_1 19 86 IPR000504 GO:0003723
Viun5g03706 944 SMART rrm1_1 96 163 IPR000504 GO:0003723
Viun5g03706 944 SMART rrm1_1 201 269 IPR000504 GO:0003723
Viun5g03706 944 SUPERFAMILY RNA-binding domain, RBD 16 171 IPR035979 GO:0003676
Viun5g03706 944 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 84 IPR000504 GO:0003723
Viun5g03706 944 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 265 IPR000504 GO:0003723
Viun5g03706 944 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 157 IPR000504 GO:0003723
Viun5g03706 944 CDD RRM_SF 20 86 - -
Viun5g03706 944 Gene3D - 5 92 IPR012677 -
Viun5g03706 944 MobiDBLite consensus disorder prediction 728 772 - -
Viun5g03706 944 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 90 IPR000504 GO:0003723
Viun5g03706 944 MobiDBLite consensus disorder prediction 734 772 - -
Viun5g03706 944 CDD SPOC_FPA-like 482 602 - -
Viun5g03706 944 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 167 IPR000504 GO:0003723
Viun5g03706 944 SUPERFAMILY RNA-binding domain, RBD 185 275 IPR035979 GO:0003676
Viun5g03706 944 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Viun5g03706 944 FunFam Flowering time control protein FPA 10 92 - -
Viun5g03706 944 Gene3D - 93 175 IPR012677 -
Viun5g03706 944 FunFam flowering time control protein FPA 194 286 - -
Viun5g03706 944 Pfam SPOC domain 476 594 IPR012921 -
Viun5g03706 944 PANTHER RNA RECOGNITION MOTIF-CONTAINING 7 88 - -
Viun5g03706 944 MobiDBLite consensus disorder prediction 878 901 - -
Viun5g03706 944 MobiDBLite consensus disorder prediction 659 684 - -
Viun5g03706 944 FunFam Flowering time control protein FPA isoform A 93 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03706 Viun-Chr5 46074213 46081639 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03706 97 268 Eukaryotic Initiation Factors Gene Family AT4G34110 28.962 4.87e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03706 - - gmx:100806555 1506.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03706 5 46074213 46081639 Viun5g03706 5 46074213 46081639 ECH
Viun5g03706 5 46074213 46081639 Viun11g02309 11 37408835 37420984 PCT