Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03698 ATGAAAATTCAGTGTGATGTGTGTGAGAGGGCTCCTGCAACAGTGATTTGTTGCGCAGATGAGGCAGCTTTGTGTGCCAAATGTGATGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCACCAAAGGCTTCTCCTTCAATGTCTATCGAACAAGCTTCCCAGATGTGACATTTGCCAGGACAAGCCAGCATTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTCAGGACTGTGATGAACCGATTCATTCAGCTGGAAGCCTCTCTGCAAACCACCAGCGGTTCCTAGCAACTGGTATCAGAGTGGCCTCAAGTTCTAATTGCACCAAAGACAATGAAAACAGTCACTTGGAGCCTCCCAATAGGAATGCACAACAAGTTCCCACCAAAGTTCCTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCTGTTGATGACTTTTTGGAGTTAACAGGCTTTGAATCACCTGAGAAAAAGGAATCTCTACAATTTGGAGAGCTGGAATGGCTTACAGATGTGGGTATTTTTGGTGAACAATTTACTCAGGAAGCCTTGGCTGCAGCTGAAGTACCTCAGCTTCCGGTAACTAATAATAGCAGCAGTGTTGCCTCATACAGAACCTCCAAGTCCTACATGTCACACAAAAAACCAAGGATTGAAGTCCTAAATGATGATGATGATGATGATGATGAGTACTTTACTGTGCCTGATCTTGGATAA 729 0.4444 MKIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKPAFIFCVEDRALFCQDCDEPIHSAGSLSANHQRFLATGIRVASSSNCTKDNENSHLEPPNRNAQQVPTKVPSQQVPSFTSSWAVDDFLELTGFESPEKKESLQFGELEWLTDVGIFGEQFTQEALAAAEVPQLPVTNNSSSVASYRTSKSYMSHKKPRIEVLNDDDDDDDEYFTVPDLG 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03698 242 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Viun5g03698 242 CDD Bbox1_BBX-like 5 47 - -
Viun5g03698 242 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Viun5g03698 242 MobiDBLite consensus disorder prediction 226 242 - -
Viun5g03698 242 MobiDBLite consensus disorder prediction 200 242 - -
Viun5g03698 242 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 241 - -
Viun5g03698 242 Gene3D Classic Zinc Finger 1 95 - -
Viun5g03698 242 CDD Bbox1_BBX-like 57 98 - -
Viun5g03698 242 SMART bboxneu5 52 99 IPR000315 GO:0008270
Viun5g03698 242 SMART bboxneu5 4 47 IPR000315 GO:0008270
Viun5g03698 242 MobiDBLite consensus disorder prediction 109 136 - -
Viun5g03698 242 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Viun5g03698 242 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03698 Viun-Chr5 46033024 46035290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03698 1 161 Orphan Transcription Factor Family AT1G06040 65.476 7.32e-68 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Viun5g03698 zf-B_box 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03698 - - vun:114183169 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03698 5 46033024 46035290 Viun5g03698 5 46033024 46035290 ECH
Viun5g03698 5 46033024 46035290 Viun11g02299 11 37381664 37384584 PCT