LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g03693	ATGAACCTATGGCCAGTTCGATTTGTTGCTATATTTGAGGTTGTGGTTTTCTCATGCTTGTGGTTGCAAGTTTCAAGTCTTGGCTCCATGTCTTCCATTGCCGTCTCTTACGGCGACAAAGGGTCCGCGTTTTGTGGCTTGAAACCGGATGGATCTCACACTGTAAACTGTTACGGGATGAACTCAGCCATAATTTATGGAACACCAACACATTTTCCGTTCTTTGGTCTAGCGGCCGGTGATGGCTTTGTGTGTGGGCTCTTGATGAGTTCTAGTCAACCATATTGCTGGGGTAGCAGTGGCCATGTTGAAATGGGTGTGCCACAACCTATGCTTAAGGGAGCTCAGTACCTAGAGATCAGTGCCGGGGATTTTCACGTTTGCGGATTGAGGAAACCATTGACCGGAAGACACAGGAACACTTCTTTGGTTGATTGTTGGGGCTACAACATGACAAATAACTATGTGTTTGATGGGCAGGTTCAAGCAATCTCAGCAGGCTCTCAGTTCAATTGTGGCTTGTTTTCTCAGAACAGGAGTGTGTTCTGCTGGGGGGATGAGACCAGTAGCCAGGTTATTAACATGGTTCCTAGAGGCATGAGGTTCCAGAAGATCTCTGCTGGAGGGTACCATGTGTGTGGAATCTTGGAAGGGGTGAATTCTAGAGCTGTTTGTTGGGGGAGGAGCTTGCTGGATTTGGGTGAAGAACTTTCAATTTCATTGACAGGTTCAGGACAAGGACAAGGTAAAGTTGAATTGGCTCCCAATGATCCCATGCTTTCTGTGGTGGGAGGGAAGTTCCATGCATGTGGGATTAAGACCTATGATCATGGAGTGGTTTGTTGGGGCTATAGTTTCAAAGCAGGCACAAGAGTTCCTAGTGGGATTAAGGCCTTTGAGATTGGTGCTGGGAATTACTTTACCTGTGGAGTGCTTGTTGAGAAATCTCACATGCCTGTTTGTTGGGGTGTTGGATTCCCCACTTCTCTCCCTTTGCCTGTCTCACCAAGAATGTGTAGGTCTACTCCATGTCCTCCAGGGTACTTTGAAACCTCACAAAATGGTATCTGCAAAACACCAGATTCCCATGTTTGCATGCCATGCAGTGCTGCTTGTCCTCCTGAGATGTACAAGAGAAGTGGATGCAATTTGAAATCTGACATACTTTGTGAATATAACTGTTCTCTGTGTTCCTCACCAGAATGCCTCTCCAATTGCTCCTCTTCTTACTCCAATGCTGCAAATGGCAAGAGAAGTGAAAGATTTTGGTCTCTTCAACTGCCGGTGGTTATTGCTGAGATAGCTTTTGCTGTTTTCTTTGTTTGCATTGTGTCCATAACTGCAATGTTGTATGTTCGCTACAAGCTAAGAGATTGTCAGTGTTCTTCTTCTTCTTCAGCAAGAGGGTCAAAGGGGAAGAAACTAAGAGGGAGTTCCTCACACCAGAAGGAGAAATCCAAGGTCCGACCAGACATGGAGGAGTTCAAGATTAGGAGAGCACAGATGTTCCCGTACGAGGAACTTGAAAGAGCAACCGGTGGATTCAAAGAGGAGTCTATAGTGGGGAAGGGAAGTTTCTCTTGTGTGTTCAAAGGGGTTCTCAAAGATGGCACTGTTGTTGCTGTCAAAAGGGCCATAATGTATCCCAACGTGCAGAAGAATTCCAAGGAGTTTCACACCGAGCTTGACTTGCTCTCTAGGCTGAACCACGCACACTTGCTCAATCTACTAGGCTACTGTGAGGAGGGTGGAGAGAGACTACTTGTTTACGAGTACATGGCTCATGGCTCATTGCATCAACACCTTCATGGCAACAAAGTGATGAAAGAGCAAATGGATTGGGTGAGAAGGGTGACAATTGCAGTGCAAGCAGCACGCGGAATCGAATATCTGCATGGTTATGCTTGTCCACCAGTGATTCACAGAGATATCAAATCCTCAAACATTCTCATTGATGAAGAACACAATGCAAGAGTGGCTGATTTTGGTTTGTCACTGCTTGGTCCTGCAGATAGCAGCTCCCCACTGGCTGAACTACCAGCTGGGACTCTTGGTTATCTTGATCCTGAATACTACAGACTCCATTACCTCACCACAAAGTCTGATGTATACAGCTTTGGAGTTCTACTTTTGGAGATACTGAGTGGCAGAAAAGCTATTGACATGCAGTATGAAGAAGGGAACATTGTTCAATGGGCAGTGCCTCTGATAAAGTCAGGAGATATAGCTTCAATTCTGGATCCGGTTTTGAAAGCTCCTTCTGATGTTGATGCATTGAGAAGAATAGCTAATGTGGCTTGTAAAAGTGTGAGGATGAGAGGGAAGGATAGGCCTTCAATGGACAAAGTGACTACAGTTTTGGAGAGAGCTCTTGCACAGTTGATGGGGAGTCCTTGCATTGAGCAGCCAATTTTGCCAACTGAAGTGGTTTTGGGAAGCAACAGATTGCACAAAAAATCATCTCAGAGATCTTCAAACAGGTCTGCCTCAGAAAGCACTGATGTGGAGGATCAGAGGTTTGAGTTTAGAGCACCCTCATGGATCACTTTCCCCAGTGTGACTTCTTCTCAGAGAAGATCAGGCTCAGAGGCTGATGTTGAGGGAAAAAATGTAGAAGGGAGGAATTTGGGCAATGTTGGAGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGCTCTGAAAAGTCTTGAGGAAGAGATTGGTCTTGCTTCTCCACGAGAGAAACTCTTCTTGCAGCACAACTTCTGA	2751	0.4595	MNLWPVRFVAIFEVVVFSCLWLQVSSLGSMSSIAVSYGDKGSAFCGLKPDGSHTVNCYGMNSAIIYGTPTHFPFFGLAAGDGFVCGLLMSSSQPYCWGSSGHVEMGVPQPMLKGAQYLEISAGDFHVCGLRKPLTGRHRNTSLVDCWGYNMTNNYVFDGQVQAISAGSQFNCGLFSQNRSVFCWGDETSSQVINMVPRGMRFQKISAGGYHVCGILEGVNSRAVCWGRSLLDLGEELSISLTGSGQGQGKVELAPNDPMLSVVGGKFHACGIKTYDHGVVCWGYSFKAGTRVPSGIKAFEIGAGNYFTCGVLVEKSHMPVCWGVGFPTSLPLPVSPRMCRSTPCPPGYFETSQNGICKTPDSHVCMPCSAACPPEMYKRSGCNLKSDILCEYNCSLCSSPECLSNCSSSYSNAANGKRSERFWSLQLPVVIAEIAFAVFFVCIVSITAMLYVRYKLRDCQCSSSSSARGSKGKKLRGSSSHQKEKSKVRPDMEEFKIRRAQMFPYEELERATGGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIMYPNVQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEYMAHGSLHQHLHGNKVMKEQMDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPADSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVQWAVPLIKSGDIASILDPVLKAPSDVDALRRIANVACKSVRMRGKDRPSMDKVTTVLERALAQLMGSPCIEQPILPTEVVLGSNRLHKKSSQRSSNRSASESTDVEDQRFEFRAPSWITFPSVTSSQRRSGSEADVEGKNVEGRNLGNVGGGGGGGGGGGGDALKSLEEEIGLASPREKLFLQHNF	916

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g03693	916	ProSiteProfiles	Protein kinase domain profile.	515	791	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g03693	916	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	639	651	IPR008271	GO:0004672\|GO:0006468
	Viun5g03693	916	Pfam	Protein kinase domain	515	781	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g03693	916	MobiDBLite	consensus disorder prediction	816	837	-	-
	Viun5g03693	916	FunFam	serine/threonine-protein kinase-like protein CCR1	485	592	-	-
	Viun5g03693	916	Gene3D	-	76	342	IPR009091	-
	Viun5g03693	916	SMART	serkin_6	515	792	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g03693	916	FunFam	Serine/threonine-protein kinase-like protein CR4	26	193	-	-
	Viun5g03693	916	Gene3D	Transferase(Phosphotransferase) domain 1	593	797	-	-
	Viun5g03693	916	MobiDBLite	consensus disorder prediction	853	894	-	-
	Viun5g03693	916	SUPERFAMILY	RCC1/BLIP-II	26	229	IPR009091	-
	Viun5g03693	916	MobiDBLite	consensus disorder prediction	462	489	-	-
	Viun5g03693	916	Gene3D	Phosphorylase Kinase; domain 1	485	592	-	-
	Viun5g03693	916	FunFam	Receptor protein kinase CRINKLY4	593	794	-	-
	Viun5g03693	916	SUPERFAMILY	Protein kinase-like (PK-like)	495	787	IPR011009	-
	Viun5g03693	916	ProSitePatterns	Protein kinases ATP-binding region signature.	521	543	IPR017441	GO:0005524
	Viun5g03693	916	SUPERFAMILY	RCC1/BLIP-II	247	338	IPR009091	-
	Viun5g03693	916	ProSiteProfiles	TNFR/NGFR family cysteine-rich region domain profile.	343	390	IPR001368	GO:0005515
	Viun5g03693	916	PANTHER	SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4	14	916	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g03693	Viun-Chr5	46011044	46014584	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g03693	8	916	Receptor kinase-like Gene Family	AT3G59420	65.870	0.0	1217

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CR4L	Viun5g03693		Pkinase	9.1e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g03693	-		-	gmx:100807392	1656.73