Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03672 ATGGATTCCGAAGACGATATGCACGACGCCAACGATATCGAGTCACTCGACGACGATTTCTACAGTGGCGAGACCGAGGATGCTCCCATGGATTACTACAGTGACTACGATGACGTCGCCGACGACTACTTCGAAGACGCTGATGATTCTGACCGGATTGAGTCGCGTCGCCCCGAGCAAAATTTTACCATACTGAGGGAATTGGACATCCGGCAAAGGCAGGAAGATGACATCACAAGAGTATCGACAGTTCTCTCAATACCGCGGGTTTCCGCGAGCATCCTACTTCGTCACTATAATTGGAGTGTCAGTAAGGTGCATGATGCTTGGTTTGCTGACGAAGAACAAGTTCGAAAGACAGTTGGTTTGTTGGATAAGCCAGTTTTCCAAAATTCTAATGCTAGAGAGCTTACTTGTGGCATCTGTTTTGAGATGTATTCTCGTTCACGAGTTAAATCGGCTGCTTGTGGTCATCCTTACTGCTATTTGTGCTGGGCAGGATATATTGGCACATCAATTAATGATGGTCCGGGATGTTTGGGGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTGTTGGTCAAGATATGATTAATCTTTTAGCATCTCCTGAAGATAAACAGAAGTATGACCGTTACCTTCTTAGGTCCTACATTGAAGACAATAAGAAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAGTACGCAGTTACTTTTGATGCTGGAAGTGGAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACAGAGGAGGCTCACCGTCCAGTGGACTGTGGCACTGTGTCAAAGTGGATTTTAAAAAATAGTGCAGAATCCGAGAACATGAACTGGATACTTGCTAACTCAAAGCCGTGTCCAAAGTGCAAGCGACCAATTGAAAAAAACCAAGGGTGCATGCATATGACTTGTACTCCACCTTGTAAATTTGAATTCTGCTGGCTATGCCTTGGTGCGTGGTCTGACCATGGTGAAAGGACGGGTGGTTTTTATGCATGCAATCGTTATGAAGCAGCTAAACAAGAGGGAGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCGTTGGAGAGGTACACACATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAAAAGGCTCTTGCAGACCTACACCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACACACAGTGCCAGCCTGAATCACAGCTTAAGTTCATAACGGAGGCATGGTTACAGATTGTTGAATGCAGGAGGGTGCTGAAATGGACATATGCATATGGGTACTATTTACCGGAGCATGAACATGCTAAAAAGCAATTCTTTGAGTACTTACAAGGTGAGGCAGAATCGGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAACTACAGTTATTCCTAAATGCCGATGGCCCATCCAGAGAATTCAATGACTTCCGCACCAAACTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTGAGGGCATTGGAGAATGGTTTATCTGATGTTGATAGTAATGGGGCTGCTTCTAGCAAAGCAACGAGCTCGAAAAATGCAGCAGGGAGCAGCAAGGGGAGAGGAGGAAGAGGAAAAGCAACTATCCGAACTAGCATATCCAGCAGAATGAGTGATGATAATCATTGGTCTTGTGAACATTGTACGTATGCAAATGTTAGGTCTGCCACCACATGCCAGATGTGCAATCAACAGCGGCGATGA 1773 0.4501 MDSEDDMHDANDIESLDDDFYSGETEDAPMDYYSDYDDVADDYFEDADDSDRIESRRPEQNFTILRELDIRQRQEDDITRVSTVLSIPRVSASILLRHYNWSVSKVHDAWFADEEQVRKTVGLLDKPVFQNSNARELTCGICFEMYSRSRVKSAACGHPYCYLCWAGYIGTSINDGPGCLGLRCPDPTCGAAVGQDMINLLASPEDKQKYDRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNADGPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKATSSKNAAGSSKGRGGRGKATIRTSISSRMSDDNHWSCEHCTYANVRSATTCQMCNQQRR 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03672 590 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 GO:0008270
Viun5g03672 590 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 GO:0008270
Viun5g03672 590 ProSiteProfiles Zinc finger RING-type profile. 139 185 IPR001841 -
Viun5g03672 590 CDD BRcat_RBR_ANKIB1 215 279 - -
Viun5g03672 590 MobiDBLite consensus disorder prediction 1 34 - -
Viun5g03672 590 Pfam Ariadne domain 357 518 IPR045840 -
Viun5g03672 590 MobiDBLite consensus disorder prediction 522 540 - -
Viun5g03672 590 CDD Rcat_RBR_ARI7-like 293 347 - -
Viun5g03672 590 SMART zf_4 564 588 IPR001876 -
Viun5g03672 590 SUPERFAMILY Ran binding protein zinc finger-like 562 589 IPR036443 -
Viun5g03672 590 Gene3D - 560 590 - -
Viun5g03672 590 FunFam RBR-type E3 ubiquitin transferase 271 521 - -
Viun5g03672 590 Gene3D - 266 521 - -
Viun5g03672 590 SUPERFAMILY RING/U-box 209 277 - -
Viun5g03672 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 220 IPR013083 -
Viun5g03672 590 SUPERFAMILY RING/U-box 135 220 - -
Viun5g03672 590 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Viun5g03672 590 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 436 IPR031127 GO:0004842|GO:0016567
Viun5g03672 590 FunFam RBR-type E3 ubiquitin transferase 133 222 - -
Viun5g03672 590 ProSitePatterns Zinc finger RanBP2-type signature. 566 585 IPR001876 -
Viun5g03672 590 SMART ibrneu5 283 344 IPR002867 GO:0008270
Viun5g03672 590 SMART ibrneu5 208 270 IPR002867 GO:0008270
Viun5g03672 590 SUPERFAMILY RING/U-box 289 337 - -
Viun5g03672 590 ProSiteProfiles Zinc finger RanBP2 type profile. 562 590 IPR001876 -
Viun5g03672 590 MobiDBLite consensus disorder prediction 522 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03672 Viun-Chr5 45937355 45945333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03672 17 589 ARIADNE family AT1G65430 70.187 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03672 K11968 - gmx:100810427 1149.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03672 5 45937355 45945333 Viun5g03672 5 45937355 45945333 ECH
Viun5g03672 5 45937355 45945333 Viun11g02253 11 37213247 37220956 PCT