LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g03672	ATGGATTCCGAAGACGATATGCACGACGCCAACGATATCGAGTCACTCGACGACGATTTCTACAGTGGCGAGACCGAGGATGCTCCCATGGATTACTACAGTGACTACGATGACGTCGCCGACGACTACTTCGAAGACGCTGATGATTCTGACCGGATTGAGTCGCGTCGCCCCGAGCAAAATTTTACCATACTGAGGGAATTGGACATCCGGCAAAGGCAGGAAGATGACATCACAAGAGTATCGACAGTTCTCTCAATACCGCGGGTTTCCGCGAGCATCCTACTTCGTCACTATAATTGGAGTGTCAGTAAGGTGCATGATGCTTGGTTTGCTGACGAAGAACAAGTTCGAAAGACAGTTGGTTTGTTGGATAAGCCAGTTTTCCAAAATTCTAATGCTAGAGAGCTTACTTGTGGCATCTGTTTTGAGATGTATTCTCGTTCACGAGTTAAATCGGCTGCTTGTGGTCATCCTTACTGCTATTTGTGCTGGGCAGGATATATTGGCACATCAATTAATGATGGTCCGGGATGTTTGGGGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTGTTGGTCAAGATATGATTAATCTTTTAGCATCTCCTGAAGATAAACAGAAGTATGACCGTTACCTTCTTAGGTCCTACATTGAAGACAATAAGAAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAGTACGCAGTTACTTTTGATGCTGGAAGTGGAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACAGAGGAGGCTCACCGTCCAGTGGACTGTGGCACTGTGTCAAAGTGGATTTTAAAAAATAGTGCAGAATCCGAGAACATGAACTGGATACTTGCTAACTCAAAGCCGTGTCCAAAGTGCAAGCGACCAATTGAAAAAAACCAAGGGTGCATGCATATGACTTGTACTCCACCTTGTAAATTTGAATTCTGCTGGCTATGCCTTGGTGCGTGGTCTGACCATGGTGAAAGGACGGGTGGTTTTTATGCATGCAATCGTTATGAAGCAGCTAAACAAGAGGGAGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCGTTGGAGAGGTACACACATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAAAAGGCTCTTGCAGACCTACACCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACACACAGTGCCAGCCTGAATCACAGCTTAAGTTCATAACGGAGGCATGGTTACAGATTGTTGAATGCAGGAGGGTGCTGAAATGGACATATGCATATGGGTACTATTTACCGGAGCATGAACATGCTAAAAAGCAATTCTTTGAGTACTTACAAGGTGAGGCAGAATCGGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAACTACAGTTATTCCTAAATGCCGATGGCCCATCCAGAGAATTCAATGACTTCCGCACCAAACTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTGAGGGCATTGGAGAATGGTTTATCTGATGTTGATAGTAATGGGGCTGCTTCTAGCAAAGCAACGAGCTCGAAAAATGCAGCAGGGAGCAGCAAGGGGAGAGGAGGAAGAGGAAAAGCAACTATCCGAACTAGCATATCCAGCAGAATGAGTGATGATAATCATTGGTCTTGTGAACATTGTACGTATGCAAATGTTAGGTCTGCCACCACATGCCAGATGTGCAATCAACAGCGGCGATGA	1773	0.4501	MDSEDDMHDANDIESLDDDFYSGETEDAPMDYYSDYDDVADDYFEDADDSDRIESRRPEQNFTILRELDIRQRQEDDITRVSTVLSIPRVSASILLRHYNWSVSKVHDAWFADEEQVRKTVGLLDKPVFQNSNARELTCGICFEMYSRSRVKSAACGHPYCYLCWAGYIGTSINDGPGCLGLRCPDPTCGAAVGQDMINLLASPEDKQKYDRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNADGPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKATSSKNAAGSSKGRGGRGKATIRTSISSRMSDDNHWSCEHCTYANVRSATTCQMCNQQRR	590

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Viun5g03672	590	Pfam	IBR domain, a half RING-finger domain	208	270	IPR002867	GO:0008270
Viun5g03672	590	Pfam	IBR domain, a half RING-finger domain	287	335	IPR002867	GO:0008270
Viun5g03672	590	ProSiteProfiles	Zinc finger RING-type profile.	139	185	IPR001841	-
Viun5g03672	590	CDD	BRcat_RBR_ANKIB1	215	279	-	-
Viun5g03672	590	MobiDBLite	consensus disorder prediction	1	34	-	-
Viun5g03672	590	Pfam	Ariadne domain	357	518	IPR045840	-
Viun5g03672	590	MobiDBLite	consensus disorder prediction	522	540	-	-
Viun5g03672	590	CDD	Rcat_RBR_ARI7-like	293	347	-	-
Viun5g03672	590	SMART	zf_4	564	588	IPR001876	-
Viun5g03672	590	SUPERFAMILY	Ran binding protein zinc finger-like	562	589	IPR036443	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g03672	Viun-Chr5	45937355	45945333	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g03672	17	589	ARIADNE family	AT1G65430	70.187	0.0	842

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g03672	K11968		-	gmx:100810427	1149.81

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun5g03672	5	45937355	45945333	Viun5g03672	5	45937355	45945333	ECH
	Viun5g03672	5	45937355	45945333	Viun11g02253	11	37213247	37220956	PCT

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