Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03622 ATGGCAGAGGAACTTGACCTCGACAACCTTAAGGCTCTGAAAGTTTTAGGTAAAGGAGCCATGGGCACTGTGTTTCTCGTGCAACACAACTCCGGCCATGTGGCGCTCAAAGTCGTCGACAAATCATCATCCCTTCACGACGGCGCTCGCCGCGCCCACTGGGAAATCAGCGTTCTCTCTCGCTTATCCCACCCCTTCCTCCCCACCCTACTGGGTTCCTTCGAGTCCAACAACTTAATGGGCTGGGCCGTCCCCTACTGCCCCGGCGGCGACCTCAACCTCCTCCGTTACCGCCAAACAGATCACGTATTCTCCCCCGCCGTCGTCCGCTTCTACCTCGCCGAGATCCTCTGCGCTCTCCACCACCTTCACTCCATGCACATCGTGTACCGCGACCTCAAACCCGAAAACGTCCTCATCCAACAATCCGGCCACGTCACCCTCACCGACTTCGACCTCTCCCGAACTCTCAGTCCCACCAAAACCAATACTTCTCCCTCCAACTCCCACATTCCTGACACCGCTCCGCGCAAGCCCCGCCGCAACTTCCGCTGGGTCCCACTCACCAAGGCTCCCAAGTCCGCCCGAGTCACCCCCGCCGCGCGCCGCGCGGCGCCGAGCTTCGAGCGGTCGAACTCGTTCGTGGGCACCGAGGAGTACATCGCGCCGGAGGTCCTCCGAGGCGAGGGGCACGGCTTCGCCGTCGACTGGTGGGCCCTCGGCGTCCTCGCCCACGAGATGGTGTACGGAACGACGCCGTTCAAGGGAAGGAATCGCAAGGAAACGTTCCGCAACGTGTTGTTGAAGACGCCCGAGTTTGTTGGGAAGAAAACAGCGTTGACGGACCTAATCTCTCGGTTGCTCGAAAAGGACCCCTCCAAGCGTTTGGGTTATGTTCGCGGCGCCAGCGAGATCAAGGAGCACGAGTTCTTCAGAGGGGTGAAGTGGGACCTACTAACGGAGGTTATGCGGCCGCCGTTTATTCCTTCAAGAGATGACGTTACGAAACCTTTCGCCGATGGACTTGACGTAAGGGGATATTTTCAGAGCCTGAAATCTCCGCCGTCTTTGCCCCCTTCGCCGTTACCGTCACCGTCGTGTGAGTTTCAGAACGTTTCTTTACCGGAATTCTGA 1134 0.5891 MAEELDLDNLKALKVLGKGAMGTVFLVQHNSGHVALKVVDKSSSLHDGARRAHWEISVLSRLSHPFLPTLLGSFESNNLMGWAVPYCPGGDLNLLRYRQTDHVFSPAVVRFYLAEILCALHHLHSMHIVYRDLKPENVLIQQSGHVTLTDFDLSRTLSPTKTNTSPSNSHIPDTAPRKPRRNFRWVPLTKAPKSARVTPAARRAAPSFERSNSFVGTEEYIAPEVLRGEGHGFAVDWWALGVLAHEMVYGTTPFKGRNRKETFRNVLLKTPEFVGKKTALTDLISRLLEKDPSKRLGYVRGASEIKEHEFFRGVKWDLLTEVMRPPFIPSRDDVTKPFADGLDVRGYFQSLKSPPSLPPSPLPSPSCEFQNVSLPEF 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03622 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Viun5g03622 377 Gene3D Transferase(Phosphotransferase) domain 1 209 330 - -
Viun5g03622 377 MobiDBLite consensus disorder prediction 157 172 - -
Viun5g03622 377 SMART serkin_6 10 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03622 377 SUPERFAMILY Protein kinase-like (PK-like) 6 364 IPR011009 -
Viun5g03622 377 Pfam Protein kinase domain 211 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03622 377 Pfam Protein kinase domain 12 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03622 377 FunFam Serine/threonine-protein kinase OXI1 209 330 - -
Viun5g03622 377 ProSitePatterns Protein kinases ATP-binding region signature. 16 37 IPR017441 GO:0005524
Viun5g03622 377 FunFam Serine/threonine-protein kinase OXI1 91 159 - -
Viun5g03622 377 Gene3D Transferase(Phosphotransferase) domain 1 91 163 - -
Viun5g03622 377 PANTHER FLIPPASE KINASE 1-RELATED 4 332 - -
Viun5g03622 377 Gene3D Phosphorylase Kinase; domain 1 10 90 - -
Viun5g03622 377 MobiDBLite consensus disorder prediction 157 179 - -
Viun5g03622 377 ProSiteProfiles Protein kinase domain profile. 10 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03622 Viun-Chr5 45582672 45585186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03622 2 368 AGC Kinase Gene Family AT1G51170 57.683 1.99e-145 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Viun5g03622 Pkinase 3.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03622 - - gmx:100802613 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03622 5 45582672 45585186 Viun5g03622 5 45582672 45585186 ECH
Viun5g03622 5 45582672 45585186 Viun11g02217 11 36965188 36966817 PCT