Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03620 ATGACTCACCCCTTTTGCTCCAATCACTTCAATTCTTGGTTTGACCTCAATTCTCCATTCCTTTTCTCTTCTTCTTCTTCTTCTTCTTCTTCATCACCTTGCTCCAACCCTCCATTCTATTTTCCTTCTACTTTTCATCACAATCAATCTTCTTCTCCCCCCAAAGAAGCACTTCCTCTCCTTAACCTTAGCCCTGCAAGGGGTGAAGATCTTGAATCTTCCTTCAGTGCCATGAAAGTCAACAGAGAGAAGGAGAGAGAAGCAAGCATATCGTCCAATAATAACTCCAACTCCATGGATGATGAAACTGTCACCGTGGCTTTGCACTTAGGGCTTCCAAACACTACTGCTTCTGCTTCTGCTGATTCATCTTCAAACACATACTCACCACACAAAGAAAAAGCTTGTGAGTATTCTCCCAGTAGAATTAACAAGGGCCAATATTGGATCCCTACCCCTGCTCAAATTCTCATCGGTCCAACACAGTTCTCCTGCCCCCTTTGTTTCAAGACTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGGCCAGAGTCTCTGAGAGGAACTCAACCAACAGCAATGCTTAGACTTCCTTGCTATTGTTGTGCACCTGAATGCAAGAACAACATTGATCATCCAAGAGCAAAGCCACTCAAAGATTTTAGGACCCTCCAAACTCATTACAAGAGAAAGCATGGAATCAAGCCCTTCATGTGCAGAAAATGCTGCAAAGCTTTTGCTGTTAGGGGTGATTGGAGGACCCATGAGAAGAACTGTGGCAAGTTATGGTATTGCTCTTGTGGCTCTGATTTCAAGCACAAACGCTCTCTCAAAGATCATATCAAGGCTTTTGGGAATGGACATAAAGCTTTTGGAATCGATTGTTTTGACCAGGACGATGAAGCTGCCTCTGAAATTGAGCATGAAAATGTCAATGAATCTTTACTTTCTAGTCATAGTTGA 993 0.428 MTHPFCSNHFNSWFDLNSPFLFSSSSSSSSSSPCSNPPFYFPSTFHHNQSSSPPKEALPLLNLSPARGEDLESSFSAMKVNREKEREASISSNNNSNSMDDETVTVALHLGLPNTTASASADSSSNTYSPHKEKACEYSPSRINKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPECKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAFGIDCFDQDDEAASEIEHENVNESLLSSHS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03620 330 Gene3D Classic Zinc Finger 245 323 - -
Viun5g03620 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 190 IPR013087 -
Viun5g03620 330 MobiDBLite consensus disorder prediction 115 132 - -
Viun5g03620 330 FunFam Zinc finger protein WIP2 216 298 - -
Viun5g03620 330 PANTHER ZINC FINGER PROTEIN WIP2 23 320 IPR043584 GO:0003700|GO:0010468
Viun5g03620 330 SUPERFAMILY beta-beta-alpha zinc fingers 229 267 IPR036236 -
Viun5g03620 330 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Viun5g03620 330 Gene3D Classic Zinc Finger 162 185 - -
Viun5g03620 330 SUPERFAMILY beta-beta-alpha zinc fingers 136 185 IPR036236 -
Viun5g03620 330 MobiDBLite consensus disorder prediction 115 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03620 Viun-Chr5 45570356 45572673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03620 1 327 C2H2 Transcription Factor Family AT3G57670 55.469 3.45e-130 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun5g03620 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03620 - - vum:124825208 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03620 5 45570356 45572673 Viun5g03620 5 45570356 45572673 ECH
Viun1g01779 1 29537464 29540168 Viun5g03620 5 45570356 45572673 ECH
Viun7g01081 7 11404010 11405305 Viun5g03620 5 45570356 45572673 ECH
Viun5g03620 5 45570356 45572673 Viun11g02210 11 36886283 36888912 PCT