Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03618 ATGAATAGTTCGGGTTTGGGTGGTGGATTTTTATCTGGTCCCAGTGGGGGGATTTTGGACTTGGAATCTTCATTTCATAGACATCAACAGACTCAACTTGGTCATCCATCAATTACTGGTCAACAACACTTGAATATCATGGGTGGTCTCGAAAGTGATCACCCCATTGGCCTAATTGAAGTGAAAAATTTGAATGCCGGGTTGAATTTTGGTAAAGGAAAGACAATTGCTCCTTCCAATAGTAATGAGTTGAGTGACGAGGATGAGCCTAGCTATGCAGAAGAAGGGAATTGTGAGAACCCGGATGGTGGGAAGAGCAAAAAGGGGTCTCCTTGGCAGCGAATGAAGTGGACAGATAATGTGGTTAGGCTTCTTATAACAGTGGTGAGTTGTGTGGGTGATGATGGCACTATTGGGGGCATGGATGGTCATAAAAGGAAATCTGGGGTTTTACAGAAGAAGGGCAAGTGGAAAACAGTCTCTAAGATAATGATAAGCAAGGGTTGCCATGTGTCGCCTCAGCAGTGTGAGGACAAGTTCAATGACTTAAATAAGAGATACAAGAGGTTAAATGACATACTTGGAAGGGGAACTTGTTGTCAAGTGGTTGAGAATCCTGCATTAATGGATTCAATACCTAACCTGTCAGCTAAGATGAAGGATGATGTCAGGAAGATCCTGAGCTCAAAACACTTGTTTTATAAGGAGATGTGTGCCTACCATAATGGGCAAAGAATACCAAATTGTCATGAACTTGATTTACAAGGTTATTCTATGGAGCATGGGAGGGACTCAAGAGAAAATAATGGATCTGAGGATGAAGATGAGGAGAACAATGATAGTGAGGATGATGAGTTGGATGATGAAATTAATATTAATGCACACGAGGATGGAGGGAGGATGCAGGAACTCTGTGATAGAAATACATTAAGCGAGGAGGATGGCCATTTTGGCCCACAAACTTCTCGGATGGACAAATTTGAGGTTGAAATGGCAAGAGTTTTTCAAGACCCCGGAAAGTCATTACGGGAACAAAGAGAGTGGATTAAAATCCAGATGTTGCAGCTTCAAGAGCAAAATATCAGCTACCAAGCCCAAGCTCTTGAACTTGAGAAACAGCGGCTTAAGTGGTTAAGATACTGCAGCAAGAAGGACAGAGAGCTGGAGAGGCTGAGATTGGAGAACAAAAGAATGAAATTAGAAAATGAGCGCAGGATCTTGAAACTGAAACAAAAAGAGCTAGAGACAGATTTCAGTACATCTGAGATGCCTTTAGACCCTGCCTCTATAGGAATGAACCGGCCGCAGGGGAGGGAACATATCAGCTTAGGCAGACAACAGTAG 1344 0.4278 MNSSGLGGGFLSGPSGGILDLESSFHRHQQTQLGHPSITGQQHLNIMGGLESDHPIGLIEVKNLNAGLNFGKGKTIAPSNSNELSDEDEPSYAEEGNCENPDGGKSKKGSPWQRMKWTDNVVRLLITVVSCVGDDGTIGGMDGHKRKSGVLQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTCCQVVENPALMDSIPNLSAKMKDDVRKILSSKHLFYKEMCAYHNGQRIPNCHELDLQGYSMEHGRDSRENNGSEDEDEENNDSEDDELDDEININAHEDGGRMQELCDRNTLSEEDGHFGPQTSRMDKFEVEMARVFQDPGKSLREQREWIKIQMLQLQEQNISYQAQALELEKQRLKWLRYCSKKDRELERLRLENKRMKLENERRILKLKQKELETDFSTSEMPLDPASIGMNRPQGREHISLGRQQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03618 447 MobiDBLite consensus disorder prediction 75 112 - -
Viun5g03618 447 Coils Coil 353 373 - -
Viun5g03618 447 MobiDBLite consensus disorder prediction 417 447 - -
Viun5g03618 447 Coils Coil 381 417 - -
Viun5g03618 447 PANTHER F16F4.11 PROTEIN-RELATED 1 420 - -
Viun5g03618 447 Pfam Myb/SANT-like DNA-binding domain 114 239 IPR044822 -
Viun5g03618 447 Gene3D - 117 189 - -
Viun5g03618 447 MobiDBLite consensus disorder prediction 270 287 - -
Viun5g03618 447 MobiDBLite consensus disorder prediction 260 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03618 Viun-Chr5 45550174 45552750 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Viun5g03618 Myb_DNA-bind_4 1.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03618 - - gmx:100798932 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03618 5 45550174 45552750 Viun5g03618 5 45550174 45552750 ECH