Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03616 ATGGAGGTCCGTTACAGTAACATGAGCTATCCCTATAGTACAGCAGGAAGCTTTATTGAATATGTTGAAGGTCTTACATACGAACATGTTAACTTCATTTTTTCTGGTGCCTCACATGCTCAGGAGAGTTCATACCCTTCAAGTTCAACTACAAGCTTTTACAAATCTGGGCTGTTTGAACCAGACAGTACCTCGTACCATCAGGATAGTAATGGTTACGAGGTGAATTATCATGAACAATTGATGGATGAGTATAGAAGGCACTCGGAAAACTCTGCAACAATCAATGAACAGATGGCAACAGTACGTATAGAAAGGGAAGGAGTAAACAATGTCACACTAGACAGTTCTACTGAATGTCCGAGAAGGCATCATAATGATTTCAATGACTATGAGGTCAGTTGGGAAGACAATATTGATCCTGACAACATGACCTATGAGGAACTACTTGAATTAGGTGAGACAGTTGGAACTGAGTGTCGTGGTCTCACCCAAGAACAAATTTCATCGATTCCAGTATCGAAATACAAGTGTGGCCGCTTTTTCTTCTTTAGGAAGAAGTCACGGGAGGAGAGATGCGTGATTTGTCAGATGGAATATAGAAGAGGGGACAAGAGGATGACTTTACCATGCAAACATGCCTATCATGCTAGCTGTGGGAACAAATGGCTTAGCATCAATAAGGCTTGCCCTATGTGTTACAGAGACGTGATTGTGGATGTGTCAAAACACAAATAA 738 0.4119 MEVRYSNMSYPYSTAGSFIEYVEGLTYEHVNFIFSGASHAQESSYPSSSTTSFYKSGLFEPDSTSYHQDSNGYEVNYHEQLMDEYRRHSENSATINEQMATVRIEREGVNNVTLDSSTECPRRHHNDFNDYEVSWEDNIDPDNMTYEELLELGETVGTECRGLTQEQISSIPVSKYKCGRFFFFRKKSREERCVICQMEYRRGDKRMTLPCKHAYHASCGNKWLSINKACPMCYRDVIVDVSKHK 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03616 245 ProSiteProfiles Zinc finger RING-type profile. 193 233 IPR001841 -
Viun5g03616 245 SMART ring_2 193 233 IPR001841 -
Viun5g03616 245 Pfam Ring finger domain 192 233 IPR001841 -
Viun5g03616 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 241 IPR013083 -
Viun5g03616 245 FunFam E3 ubiquitin ligase BIG BROTHER 153 238 - -
Viun5g03616 245 SUPERFAMILY RING/U-box 192 240 - -
Viun5g03616 245 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 238 IPR033276 GO:0004842|GO:0016567|GO:0046621
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03616 Viun-Chr5 45533365 45537509 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03616 2 244 C3H Transcription Factor Family AT3G63530 38.211 3.30e-53 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03616 K19045 - gmx:100793907 368.622