Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03613 ATGGAGGTCCGTTACAGTAACATGAGCTATCCCTATAGTACAGCAGGAAGCTTTATTGAATATGTTGAAGGTCTTACATACGAACATGTTAACTTCATTTTTTCTGGTGCCTCACATGCTCAGGAGAGTTCATACCCTTCAAGTTCAACTACAAGCTTTTACAAATCTGGGCTGTTTGAACCAGACAGTACCTCGTACCATCAGGATAGTAATGGTTACGAGGTGAATTATCATGAACAATTGATGGATGAGTATAGAAGGCACTCGGAAAACTCTGCAACAATCAATGAACAGATGGCAACAGTACGTATAGAAAGGGAAGGAGTAAACAATGTCACACTAGACAGTTCTACTGAATGTCCGAGAAGGCATCATAATGATTTCAATGACTATGAGGTCAGTTGGGAAGACAATATTGATCCTGACAACATGACCTATGAGGAACTACTTGAATTAGGTGAGACAGTTGGAACTGAGTGTCGTGGTCTCACCCAAGAACAAATTTCATCGATTCCAGTATCGAAATACAAGTGTGGCCGCTTTTTCTTCTTTAGGAAGAAGTCACGGGAGGAGAGATGCGTGATTTGTCAGATGGAATATAGAAGAGGGGACAAGAGGATGACTTTACCATGCAAACATGCCTATCATGCTAGCTGTGGGAACAAATGGCTTAGCATCAATAAGGCTTGCCCTATGTGTTACAGAGACGTGATTGTGGATGTGTCAAAACACAAATAA 738 0.4119 MEVRYSNMSYPYSTAGSFIEYVEGLTYEHVNFIFSGASHAQESSYPSSSTTSFYKSGLFEPDSTSYHQDSNGYEVNYHEQLMDEYRRHSENSATINEQMATVRIEREGVNNVTLDSSTECPRRHHNDFNDYEVSWEDNIDPDNMTYEELLELGETVGTECRGLTQEQISSIPVSKYKCGRFFFFRKKSREERCVICQMEYRRGDKRMTLPCKHAYHASCGNKWLSINKACPMCYRDVIVDVSKHK 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03613 245 ProSiteProfiles Zinc finger RING-type profile. 193 233 IPR001841 -
Viun5g03613 245 SMART ring_2 193 233 IPR001841 -
Viun5g03613 245 Pfam Ring finger domain 192 233 IPR001841 -
Viun5g03613 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 241 IPR013083 -
Viun5g03613 245 FunFam E3 ubiquitin ligase BIG BROTHER 153 238 - -
Viun5g03613 245 SUPERFAMILY RING/U-box 192 240 - -
Viun5g03613 245 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 238 IPR033276 GO:0004842|GO:0016567|GO:0046621
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03613 Viun-Chr5 45533365 45537516 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03613 2 244 C3H Transcription Factor Family AT3G63530 38.211 3.30e-53 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03613 K19045 - gmx:100793907 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03613 5 45533365 45537516 Viun5g03613 5 45533365 45537516 ECH
Viun5g03613 5 45533365 45537516 Viun11g02204 11 36875861 36880519 PCT