Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03610 ATGGTGGCGTTGCAGGGGTACCACCAACCTTCGACAATCGAGGAAGTGAGAACCCTATGGATTGGGGATTTGCAGTATTGGGTGGACGAGGCTTACCTCAACCACTGTTTTACCCACACTGGTGAGGTTCTCTCCATCAAAATCATCCGCAACAAGATTACGAGCCAACCCGAGGCTTACGGTTTCATCGAGTTTGTTTCCCACGCGGCAGTGGAGCGCGTGCTCCAGACCTACAATGACATGCAAATGCTCGACACCGAACAAACCTTTAGGCTCAATTGGGCCTCTTTCGACATCGATGAGCGCAGGCCCGACGCGGGCCTAGAACATTCCATCTTCGTGGGCGATCTTGCTTCCGATGTAACCGATTTTCTTCTCGAAGAAACCTTCTGGGTCCACTATCCCTCCGTTCGCGGCGCCAAGGTCGTCACAGTGTTGTATTTTATATAA 450 0.5178 MVALQGYHQPSTIEEVRTLWIGDLQYWVDEAYLNHCFTHTGEVLSIKIIRNKITSQPEAYGFIEFVSHAAVERVLQTYNDMQMLDTEQTFRLNWASFDIDERRPDAGLEHSIFVGDLASDVTDFLLEETFWVHYPSVRGAKVVTVLYFI 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03610 149 SMART rrm1_1 18 87 IPR000504 GO:0003723
Viun5g03610 149 Gene3D - 16 96 IPR012677 -
Viun5g03610 149 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 97 IPR000504 GO:0003723
Viun5g03610 149 SUPERFAMILY RNA-binding domain, RBD 16 142 IPR035979 GO:0003676
Viun5g03610 149 FunFam Polyadenylate-binding protein RBP47B 16 96 - -
Viun5g03610 149 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 86 IPR000504 GO:0003723
Viun5g03610 149 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 11 144 - -
Viun5g03610 149 CDD RRM1_SECp43_like 18 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03610 Viun-Chr5 45520561 45521081 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03610 18 135 Eukaryotic Initiation Factors Gene Family AT1G49760 26.271 3.96e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03610 - - vun:114184775 308.531