Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03609 ATGATAGAGTTGAAATGGAAAAGTCCATATGCTTTTGTTGTTGATAGTTTAATGTATGCTCAAGTTTGTATTCGCCTTGATATTGCTTTTGTTGTAAATGCTTTAAATGTTTTAGGGAGATACTTGAGCGATCCAGGTTTGGGTCATTGGAAAGCCGTCATTGGTTGTTTTGATCTTGATTTTGCTGGTTACCCTGACGACCGAAAATCTACTTTCGGATTTGGTTTTATGATGGAAGGAGAAGTTATTTCTTGGAAGAGGGTTAAACAAACTCTTACAACTACTCCTGAAGGCGACACGGGCCGCTGCAAGGCTAACACATGCGTGAAATTCTCCGACGAGAACGAACGCAACCGCGCCATGACCGAGATGAACGGGGTTTATTGCTCCACCAGAGCCATGCGCATTAGCGCCGCCACGCCCAAGAAAACCACCGCTGGTTACGCCGCGCCCGCACCTGTCCCCAAACCGGTTTACCAGATTCCGGCGTACACTGCGCCGGTTCAAGCTCAACCTCCGGAGTATGATGCTAATAACACTACCATTTTTGTTGGTAGTTTGGATCTTAATGTGTCTGAGGAGGAACTGAAGCAAAACTTTCTGCAATTTGGAGAAATTGTTTCTGTTAAAATTCCGCCTGGCAAGGGATGTGGCTTTGTTCAATTTGGGACTAGGCAATCTGCTGAAGAAGCTATTCAAAAAATGCAGGGAAAGATGATAGACCAACAAGTGGTCAGGATTTCTTGGGGTAGGACCCTAGCTGCTAGACAGAGAGAAGCGACCCTTCAATTCTTCACAACAAATGCTAGTGCAATGCAAAATACGAGGAAGGACTGTGATTCTTAG 846 0.4504 MIELKWKSPYAFVVDSLMYAQVCIRLDIAFVVNALNVLGRYLSDPGLGHWKAVIGCFDLDFAGYPDDRKSTFGFGFMMEGEVISWKRVKQTLTTTPEGDTGRCKANTCVKFSDENERNRAMTEMNGVYCSTRAMRISAATPKKTTAGYAAPAPVPKPVYQIPAYTAPVQAQPPEYDANNTTIFVGSLDLNVSEEELKQNFLQFGEIVSVKIPPGKGCGFVQFGTRQSAEEAIQKMQGKMIDQQVVRISWGRTLAARQREATLQFFTTNASAMQNTRKDCDS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03609 281 FunFam polyadenylate-binding protein RBP45 163 260 - -
Viun5g03609 281 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 99 254 - -
Viun5g03609 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 252 IPR000504 GO:0003723
Viun5g03609 281 SMART rrm1_1 181 248 IPR000504 GO:0003723
Viun5g03609 281 SUPERFAMILY RNA-binding domain, RBD 158 258 IPR035979 GO:0003676
Viun5g03609 281 Gene3D - 71 147 IPR012677 -
Viun5g03609 281 Gene3D - 165 258 IPR012677 -
Viun5g03609 281 SUPERFAMILY RNA-binding domain, RBD 99 145 IPR035979 GO:0003676
Viun5g03609 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 245 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03609 Viun-Chr5 45512897 45519726 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03609 179 273 Eukaryotic Initiation Factors Gene Family AT4G34110 34.000 4.74e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03609 - - vun:114184774 565.459