Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03604 ATGGCGGCGGCGGCGGCGGCGTCGCAGGGGTACCACCAACCTTCGACAATCGAGGAAGTGAGAACCCTATGGATTGGGGATTTGCAGTATTGGGTGGACGAGGCTTACCTCAGCCACTGTTTCGCCCACACCGGCGAGGTTCTCTCCATCAAAATCATCCGCAACAAGATGACGGGCCAACCCGAGGGTTACGGTTTCGTCGAGTTTGTTTCCCACGCGGCAGCGGAGCGTGTGCTCCAGACCTACAACGGCATGCAAATGCCCGGCACCGAACAGACCTTCAGGCTCAATTGGGCCTCTTTCGGCATCGGTGAGCGCAGGCCCGACGCGGGCCCAGAACATTCCATCTTCGTGGGCGATCTTGCGCCCGACGTAACCGATTATCTTCTCCAAGAAACCTTCCGGGTCCACTACCACTCCGTTCGCGGCGCCAAGGTCGTCACGGATCCCAACACGGGCCGCTCCAAGGGCTACGGCTTCGTGAAATTCTCCGACGAGAACGAACGCAACCGCGCCATGACCGAGATGAACGGGGTTTATTGCTCCACCAGAGCCATGCGCATTAGCGCCGCCACGCCCAAGAAAACCACCGCTGGTTACGCCGCGCCCGCGCCCGCGCCTGTTCCCAAACCGGTGTACCAGATTCCGGCGTACACTGCGCCGGTTCAAGCTCAACCTCCGGAGTATGATGCTAATAACACTACCATTTTTGTTGGTAGTTTGGATCTTAATGTGTCTGAGGAGGAACTGAAGCAAAACTTTCTGCAATTTGGAGAAATTGTTTCTGTTAAAATTCCGCCTGGCAAGGGATGTGGCTTTGTTCAATTTGGGACTAGGCAATCTGCTGAAGAAGCTATTCAAAAAATGCAGGGAAAGATGATAGACCAACAAGTGGTCAGGATTTCTTGGGGTAGGACCCTAGCTGCTAGACAGGAATTACCTGCTGGGTGGGGACAACAGATGGATCCAAGTCAATGGAATGCGTACTATGGGTATGGGCAGGGTTATGAAGCATATGCTTATGGGGCAGCTCAAGATCCTTCATTGTATGCATATGGTGCATATGCTGGCTATGCACAGTATCCCCAACAGGTTGAAGGTGCTCCAGACCCAACTGGTATGGCTCCACCTACCATGGAAAGGGACGAACTGTATGATCCCTTGGCAATGCCTGATGTTGACAAGTTAAATGCTGCATACCTCTCAGTACATGGCAATGCCATTTTAGGGAGATCGCTATGGCAAAAATCCTCTTCCTCATCCTTTGAGCAAACTTAA 1278 0.5329 MAAAAAASQGYHQPSTIEEVRTLWIGDLQYWVDEAYLSHCFAHTGEVLSIKIIRNKMTGQPEGYGFVEFVSHAAAERVLQTYNGMQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRVHYHSVRGAKVVTDPNTGRSKGYGFVKFSDENERNRAMTEMNGVYCSTRAMRISAATPKKTTAGYAAPAPAPVPKPVYQIPAYTAPVQAQPPEYDANNTTIFVGSLDLNVSEEELKQNFLQFGEIVSVKIPPGKGCGFVQFGTRQSAEEAIQKMQGKMIDQQVVRISWGRTLAARQELPAGWGQQMDPSQWNAYYGYGQGYEAYAYGAAQDPSLYAYGAYAGYAQYPQQVEGAPDPTGMAPPTMERDELYDPLAMPDVDKLNAAYLSVHGNAILGRSLWQKSSSSSFEQT 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03604 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 101 IPR000504 GO:0003723
Viun5g03604 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 234 306 IPR000504 GO:0003723
Viun5g03604 425 Gene3D - 20 100 IPR012677 -
Viun5g03604 425 CDD RRM1_SECp43_like 22 102 - -
Viun5g03604 425 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 15 309 - -
Viun5g03604 425 FunFam Polyadenylate-binding protein RBP47B 20 100 - -
Viun5g03604 425 Gene3D - 103 202 IPR012677 -
Viun5g03604 425 SUPERFAMILY RNA-binding domain, RBD 212 335 IPR035979 GO:0003676
Viun5g03604 425 FunFam Polyadenylate-binding protein RBP47B 102 202 - -
Viun5g03604 425 Gene3D - 219 311 IPR012677 -
Viun5g03604 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 193 IPR000504 GO:0003723
Viun5g03604 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 180 IPR000504 GO:0003723
Viun5g03604 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 91 IPR000504 GO:0003723
Viun5g03604 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 299 IPR000504 GO:0003723
Viun5g03604 425 CDD RRM2_SECp43_like 113 192 - -
Viun5g03604 425 SMART rrm1_1 235 302 IPR000504 GO:0003723
Viun5g03604 425 SMART rrm1_1 22 97 IPR000504 GO:0003723
Viun5g03604 425 SMART rrm1_1 115 189 IPR000504 GO:0003723
Viun5g03604 425 SUPERFAMILY RNA-binding domain, RBD 20 194 IPR035979 GO:0003676
Viun5g03604 425 FunFam polyadenylate-binding protein RBP45 217 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03604 Viun-Chr5 45484810 45487956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03604 22 330 Eukaryotic Initiation Factors Gene Family AT1G49760 25.705 2.69e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03604 - - gmx:100799421 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03604 5 45484810 45487956 Viun5g03604 5 45484810 45487956 ECH
Viun5g03604 5 45484810 45487956 Viun11g02196 11 36828294 36831461 PCT