Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03603 ATGGCTGCAACTCCTTCCAAATGCAAATTGCGATCCCAATCCAATGCTAAATCTTCACCCGCTTTAACTCCACGCACTCCACAAACCCTACATCTGCGCAGATCCGCACGCGCCAAGTCCCTCCTCTTCGATGCTCCCAAATCTCCCAACCCACCTTGTGAAATCTCCTTCACAACTCCCAAAAGGAGAAATCAAAGAATCAACGATAATGTCGGGCATGATTCCGGCGAAGTCAAAGTCGCCACTAAAGAATCAGCTATGAAGAATGGTGCATCGAAGGAAAAGTATAGGAAGAGCTCAATTGAAGCTTCTCTCGCTCCGGTGACGCCGGCTTCCTCGGAGAAGACCTCAAAGAGGAAAAGGGAGGGTGAGCAGAAGGGTGTGGTTACCAGAGCTAAAAGGGGGAAATTGGAGAATGAAAAAAGGAGTTCAAAGTTGCCTGCGAGGCGCCAATATTACAAAAAGGTGATTTTTGATGGGGGGGAGTTTGAAGTGGGGGATGACGTTTACGTCAAGAGGAGAGAAGATGCTTCGTCCGATGATGAAGATCCCGAAGTTGAGCTGTGTAGGATGTGTTTCTTGACAAACAACGATGTCCTGATTGAATGTGACGATTGTTTGAATGGGTTTCATTTGAAATGTTTGAGGCCTCCGTTGAAGGATGTTCCTGAAGGGGATTGGATATGTGGGTTCTGTGAGGCTCGGAGAACCGGCAAGGAGGTTCATCTTCCAAAGCCTCCGGTGGGGAAGAAAGTGGTTAGAACTCTGAGGGAGAAACTTCTTTCGAGTGATTTGTGGGCTGCTCATATTGAAAGCATATGGAAAGAGGTGGACGGCAACTATTGGTGTCGGGTGCGTTGGTATACAATCCCGGAAGAGACTTCTGTTGGGAGGCAGCCTCATAATCTGAGAAGGGAGCTATACCGAACTAATGACTTTGCGGACATTGAGATGGAGTCTGTCCTTAGACATTGCTATGTTATGACCCCTAAAGAATATGCTAACGCTAGCAATGAGGGAGATGATGTTTTCTTATGTGAATACGAGTATGATATCAATTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAAGAGAGAATGGTGAAGGGACTGACAGTGATGAAGACTGGGGCCTTGACAATGAATCAGACTCTGATACAGATGAAGATGTTGGATACGAAGAAGAAAACACTAAAGATGGACTATCTCAGCCATCAAAAGGCCACCACTTGGCTGCAAATCTTCACAAGGGACGGTTCTTTGGACTTCAGAAGATAGGCACCAAAAGAATTCCACAGCACGTAAGGTCTCACAAACAGACCGATCTTGAGAGAGCAAAGGCTACACTGTTATTGGCATCACTACCTAAATCTTTACCTTGTAGAAACAAAGAAATGGAGGAGATAACTACATTCGTCAAAGGTGCTATTTCTGACAATCAATGTCTGGGAGGTTGCCTCTACATTCATGGAGTTCCCGGAACTGGCAAGACAATGAGTGTACTATCGGTGATGAGGAGCTTGAAGTCAGAAGTTGATGCTGGAAACATCAAACCATACACATTTGTGGAGATTAATGGTTTGAAGTTGGCATCACCAGAGAATATTTATCGGGTCATATACGAGGCACTGAATGGACATAGGGTCAGCTGGAAAAAGGCTCTCCACTTGCTGAATGAGAGATTTGTAGAAGGAAAGAAAATCAGAGATGAGGCTGATCGACCATGTATTTTGCTTATTGATGAACTCGATCTTCTAGTAACCAGAAACCAATCGGTTCTGTATAATATTCTTGACTGGCCTACTAAGCCACATTCCAAACTAATAGTCATAGGGATAGCAAATACTATGGATCTTCCAGAGAAATTACTTCCTCGTATATCAAGCAGAATGGGAATTCAGAGGCTTTGCTTTGGCCCATATAATTTTCACCAGCTTCAAGAAATCATCTCAAGTCGCCTAAATGGAATTGATGTATTTGAAAAGCAAGCTGTAGAATTTGCTTCAAGAAAGGTTGCAGCTATCTCAGGAGATGCACGTCGTGCTTTGGAGATATGCAGACGTGCAGCCGAAATTGCAGATTATCGAATGAAGAAGTCAATTTCTAGTCCTGATCTTGTTACTACAGGAAAGGTACTTGTTGGAATGGTAGATGTTGAAGCAGCCATTCAAGAAATGTTCCAAGCACCTCATATTCAAATGATGAAAAGCTGTTCCAGATTGAGCAAAATTTTCCTGACAGCTATGGTACACGAGCTTTATAATACAGGAATGGGGGAAACCACTTTTGAAAAGTTGGCAATGAGGGTTTCATGTCTATGTGTCAGCAACGGAGAAGTTTTTCCTGGATACGATACTCTTCTGCAAGTTGGCTGTAAGCTAGGTGAATGCAGGATTATTTTATGTGAAGCAGGCTCCAAGCACAAGTTGCAGAAATTGCAGCTTAATTTCCCCAGTGATGATGTGGCCTTTGCGCTGAGAGACTGCAAAGATCTACCTTGGCTCTCAAAATATCTGATGTAG 2529 0.4377 MAATPSKCKLRSQSNAKSSPALTPRTPQTLHLRRSARAKSLLFDAPKSPNPPCEISFTTPKRRNQRINDNVGHDSGEVKVATKESAMKNGASKEKYRKSSIEASLAPVTPASSEKTSKRKREGEQKGVVTRAKRGKLENEKRSSKLPARRQYYKKVIFDGGEFEVGDDVYVKRREDASSDDEDPEVELCRMCFLTNNDVLIECDDCLNGFHLKCLRPPLKDVPEGDWICGFCEARRTGKEVHLPKPPVGKKVVRTLREKLLSSDLWAAHIESIWKEVDGNYWCRVRWYTIPEETSVGRQPHNLRRELYRTNDFADIEMESVLRHCYVMTPKEYANASNEGDDVFLCEYEYDINWHSFKRLADIDNERENGEGTDSDEDWGLDNESDSDTDEDVGYEEENTKDGLSQPSKGHHLAANLHKGRFFGLQKIGTKRIPQHVRSHKQTDLERAKATLLLASLPKSLPCRNKEMEEITTFVKGAISDNQCLGGCLYIHGVPGTGKTMSVLSVMRSLKSEVDAGNIKPYTFVEINGLKLASPENIYRVIYEALNGHRVSWKKALHLLNERFVEGKKIRDEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNFHQLQEIISSRLNGIDVFEKQAVEFASRKVAAISGDARRALEICRRAAEIADYRMKKSISSPDLVTTGKVLVGMVDVEAAIQEMFQAPHIQMMKSCSRLSKIFLTAMVHELYNTGMGETTFEKLAMRVSCLCVSNGEVFPGYDTLLQVGCKLGECRIILCEAGSKHKLQKLQLNFPSDDVAFALRDCKDLPWLSKYLM 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03603 842 Pfam PHD-finger 189 234 IPR019787 -
Viun5g03603 842 Pfam ATPase family associated with various cellular activities (AAA) 490 635 IPR003959 GO:0005524|GO:0016887
Viun5g03603 842 MobiDBLite consensus disorder prediction 114 145 - -
Viun5g03603 842 SMART BAH_4 220 361 IPR001025 GO:0003682
Viun5g03603 842 ProSiteProfiles Zinc finger PHD-type profile. 186 235 IPR019787 -
Viun5g03603 842 Gene3D - 441 639 IPR027417 -
Viun5g03603 842 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 293 836 - -
Viun5g03603 842 FunFam Origin recognition complex subunit 1 252 444 - -
Viun5g03603 842 FunFam Origin recognition complex subunit 1 184 251 - -
Viun5g03603 842 SUPERFAMILY FYVE/PHD zinc finger 175 242 IPR011011 -
Viun5g03603 842 MobiDBLite consensus disorder prediction 369 397 - -
Viun5g03603 842 ProSiteProfiles BAH domain profile. 244 361 IPR001025 GO:0003682
Viun5g03603 842 MobiDBLite consensus disorder prediction 66 81 - -
Viun5g03603 842 Gene3D - 640 730 - -
Viun5g03603 842 SMART AAA_5 485 639 IPR003593 GO:0016887
Viun5g03603 842 MobiDBLite consensus disorder prediction 1 145 - -
Viun5g03603 842 MobiDBLite consensus disorder prediction 366 411 - -
Viun5g03603 842 FunFam Origin recognition complex subunit 1 638 730 - -
Viun5g03603 842 ProSitePatterns Zinc finger PHD-type signature. 189 232 IPR019786 -
Viun5g03603 842 SMART PHD_3 188 233 IPR001965 -
Viun5g03603 842 FunFam Origin recognition complex subunit 1 442 641 - -
Viun5g03603 842 Gene3D - 83 189 IPR043151 -
Viun5g03603 842 Pfam BAH domain 163 359 IPR001025 GO:0003682
Viun5g03603 842 Pfam AAA lid domain 663 697 IPR041083 -
Viun5g03603 842 Gene3D - 255 421 IPR043151 -
Viun5g03603 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 241 IPR013083 -
Viun5g03603 842 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 455 705 IPR027417 -
Viun5g03603 842 MobiDBLite consensus disorder prediction 7 30 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03603 4 841 Core DNA Replication Machinery Family AT4G14700 61.412 0.0 1006
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun5g03603 BAH 4.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03603 K02603 - gmx:100798547 1464.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03603 5 45477408 45483480 Viun5g03603 5 45477408 45483480 ECH