Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03601 ATGAGGAAGCCAGAACTGTGCAGTGGTAAAGACAGCAACAAGTTCAGAAAGGGATTGTGGTCGCCAGAAGAAGATGAGAAACTCATGAACTACATGCTCAACAATGGACAAGGTTGTTGGAGCGACGTCGCAAGAAATGCTGGCCTCCAAAGGTGTGGCAAAAGTTGTCGCCTACGATGGATCAATTACTTGAGGCCTGATCTCAAGAGAGGTGCATTCTCACCCCAAGAAGAGGAACTCATCATCCACTTCCATTCCTTTCTCGGAAACAGATGGTCTCAAATAGCGGCGCGTTTGCCTGGGAGAACCGACAACGAGATAAAAAACTTTTGGAATTCAACGATAAAGAAAAGACTCAAGAACATGTCGTCTACGACCTCACCAAATGCTAGTGAGACCTCATCTGAACCAAGTAATAAAGACCTCAACATGGGAGGGTTTATACCTACACAACATCATCATCATCATCATCAGCATGCAAACTTTGTGCCTGTGTTTGGTTCATCTCCATCACAATCAATGCAAACCACAGTTTTCAATACAATGATCGACAGGTTGGATCATGAACTAAACATGCCACATAATGTTGGTGAATACTTGGAAGGCACAGGGCCATGCTTTTCTCAAAGTGAAGCTCACAACAAAGGTTCTTATTCAGAAAACGGAGTGTTTGGGAGTGATATCTTTGTTCCTCCCCTTGAGAATCTAAACACCAGTATCAATCATAACACGTGCAAGAGAGAAACTAACAGCAGTTACTTCGATGACATAAATAGTATCCTTAACAACTGCAACATTGGTAATGGCATAGCTAGTGAAAATAAGGAAGGAGTGGAGAATTTGTTTCAGCATGATGCAGAATGGGACTTTGAGGAGTTGATGAAAGATGTTTCCTCCTTTCCGTTTGTTGATTTTTCATTCTGA 924 0.4232 MRKPELCSGKDSNKFRKGLWSPEEDEKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHFHSFLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSTTSPNASETSSEPSNKDLNMGGFIPTQHHHHHHQHANFVPVFGSSPSQSMQTTVFNTMIDRLDHELNMPHNVGEYLEGTGPCFSQSEAHNKGSYSENGVFGSDIFVPPLENLNTSINHNTCKRETNSSYFDDINSILNNCNIGNGIASENKEGVENLFQHDAEWDFEELMKDVSSFPFVDFSF 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03601 307 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Viun5g03601 307 MobiDBLite consensus disorder prediction 120 145 - -
Viun5g03601 307 CDD SANT 72 112 IPR001005 -
Viun5g03601 307 Gene3D - 71 143 - -
Viun5g03601 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Viun5g03601 307 PANTHER MYB DOMAIN PROTEIN 55 7 263 - -
Viun5g03601 307 SMART sant 69 117 IPR001005 -
Viun5g03601 307 SMART sant 16 66 IPR001005 -
Viun5g03601 307 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Viun5g03601 307 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Viun5g03601 307 Gene3D - 17 69 - -
Viun5g03601 307 FunFam Transcription factor MYB46 71 140 - -
Viun5g03601 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Viun5g03601 307 CDD SANT 20 64 IPR001005 -
Viun5g03601 307 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Viun5g03601 307 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Viun5g03601 307 MobiDBLite consensus disorder prediction 120 154 - -
Viun5g03601 307 FunFam MYB transcription factor 14 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03601 Viun-Chr5 45455236 45457762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03601 1 305 MYB Transcription Factor Family AT3G08500 43.314 3.06e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun5g03601 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03601 K09422 - gmx:100799410 403.29