Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03583 ATGAGCTCCGACACGACGTCGTATTGGTGCTACAGCTGCACCCGCTTCGTTCACATCCAGGAACACAACGATGTCGTTTGTCCCCGCTGCCAGGGCGGTTTCGTCGAGAAGGTCCAGGCCGGCCACTCGCCGGCAGTCTCCCTCATCGCTGACGGCGCCACCAGAAGGCAGGGGTTCCGCCGCCGACGCCGCAACGCCGGGACGCACTCGCCGTTCAACCCGGTGATCGTGCTCCGGGGGCCGGGGGAGGACGAGGAGAGCAGTTTTGAGTTGTACTACGACGGCGACGATGGCGCGGGTCTCCGGCCGCTGCCCTCGACGATGTCGGAGTTTTTGCTCGGATCGGGATTCGATCGGTTGCTGGAGCAGGTTTCGCAGATCGAGATCAACGGCTTCGGGAGGTCGGAGAATCCGCCGGCGTCCAAGGCGGCGATAGAGTCAATGCCGACGGTGCAAATCGCTGAGTCTCAGGTCGTGACAGAGACGCACTGTGCTGTTTGCAAAGAGGCCTTCGAGCTGGGCGCGCTGGCGCGTGAGATGCCGTGCAAGCACCTCTACCACTCCGATTGCATTCTCCCGTGGCTCTCGATGCGAAACTCGTGCCCGGTGTGCCGCCACGAGTTGCCCTCGGAGCAGTCATCATCTGAGAGCAGAGTTGCGGGCCAGATCGAGGAGGAAGCAGTAGGTTTGACCATCTGGAGACTGCCTGGCGGCGGATTCGCTGTGGGTAGGTTCGCCGGTGAGAGCCACTTGCCGGTGGTGTACACGGAGATGGAGAGTGGTGGGAATTCGAGCGAAGGTTCCAGGAGAATCTCTCTGTCAGTTGGAAGCGGGAGAGTCAGGGAAAGTCGCGGTGGATTTGGCAGAATATTCCGCAATTGGTTTGGGAGAATTGGGGCTTTGACCAGAAGCCGTAGCCTTTCAACCTCGCTCTTCAGTAGAAGAAGAAGTAGCAGTAGCACGAGAACATCATGGGTTTTGGAAGATTGA 990 0.6 MSSDTTSYWCYSCTRFVHIQEHNDVVCPRCQGGFVEKVQAGHSPAVSLIADGATRRQGFRRRRRNAGTHSPFNPVIVLRGPGEDEESSFELYYDGDDGAGLRPLPSTMSEFLLGSGFDRLLEQVSQIEINGFGRSENPPASKAAIESMPTVQIAESQVVTETHCAVCKEAFELGALAREMPCKHLYHSDCILPWLSMRNSCPVCRHELPSEQSSSESRVAGQIEEEAVGLTIWRLPGGGFAVGRFAGESHLPVVYTEMESGGNSSEGSRRISLSVGSGRVRESRGGFGRIFRNWFGRIGALTRSRSLSTSLFSRRRSSSSTRTSWVLED 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03583 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 55 209 - -
Viun5g03583 329 FunFam E3 ubiquitin-protein ligase RING1-like 126 211 - -
Viun5g03583 329 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Viun5g03583 329 Pfam Protein of unknown function (DUF1117) 228 322 IPR010543 -
Viun5g03583 329 CDD RING-H2_RNF126-like 164 205 - -
Viun5g03583 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 211 IPR013083 -
Viun5g03583 329 Pfam Ring finger domain 163 205 IPR001841 -
Viun5g03583 329 SUPERFAMILY RING/U-box 144 210 - -
Viun5g03583 329 SMART ring_2 164 204 IPR001841 -
Viun5g03583 329 ProSiteProfiles Zinc finger RING-type profile. 164 205 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03583 Viun-Chr5 45372782 45374261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03583 93 216 C3H Transcription Factor Family AT5G01980 41.129 2.03e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03583 K11982 - gmx:100784822 509.22