Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03570 ATGCTTTCCACCAACACTCTTGTGCAAAATTTTGGGGGTCCCATTTCTGTGTTTTCGGATCAGAACCTAGTTACGAAGGGGATTGAGTTAGATGATTCATCTTCTCCTTCTTCTGGTACAAGCTCAAGTGGAGAGCTGACAAAGTACTCCAACCACATCCTTAGATACATAAGCGACATCCTCATGGACGAGGAAGACGACCTGTTAAACAAACCCTGCATGTTGCAGGAATGTTTGAGACTCCAGGCTGCTGAAAAATCCTTCCTTGATGTCCTTGTTCATCACAGCCCTTCTTCTTTCAGTGGTGAAAGCATTGGCATCGCAGACTCTGATGAAAATTTTGGTCGCACTGTTAGTTTTGAGAGCAATGGCAGCTGCACCACTGATAATTCATGTGAGTCTGACTTGGTCAATGGTGGAGGTGAATTTGACTCTTCTTTCTTACCACAGCAAACCCATCATGTAGTTTATTCCCCAGATGCATTTAGGGTTCGTGATGGAACCTGGAATCTCTTTCAGTCTCATACGAAGCCGCTGATGGTGGAAGAGGGTCGTTCAACTTCAGCATCCAGAGAAAAGAGGAGCCATGAGATGAATGATGAAGATGGAAGAAGAGGAGGCAAGGTTTCAGCTGTGTTTTCTGACGAGTCAGAGTCACCAGAGATCTTAGACGAGGTGCTGCTTTGTCAAATTGGAAGAAGTGAATGTTCTTCTGAACCATCACAGGGTGTTGATTCAGGAGGGTCCAGTGGAAAGGGAGCACGCTCACGTTCAAAGAAAGGGTCCACCAAAGCAGGTACAGCTGTAGATTTATGGACCCTTTTAACTCAATGTGCACAAGCAGTGGCAAGCTTTGACCAAAGGAATGCAAATGACTTACTCGGCCAGATTAAGCAACACTCTTCACCTTTTGGGGATGGACTCCAGCGTTTGGCTCATTACTTCGCCAAGGGCCTTGAGATAAGGTTGTCTGCTGGGACCCCATCATACGTGCCACTAGAAGTGGCAACTGCTGCTGATATGTTGAAAGCTTACAAACTATTTGTCACATCCTCTCCTTTGCAAAGGATGTCGAATTATTTGACAACCAAGACAGTTCTTAGTCTTGTGAAAAATGAGAGCAGTGTTCACATTATTGACTTTGGCATTTGCTATGGTTTTCAGTGGCCATGCCTTATCAAAACGCTTTCAGAAAGAGATGGTGGTCCTCCAAGGTTGCGTATAACAGGAATTGATCTTCCTCGGCCAGGATTTCGGCCTGCGGAAAGGGTTGAGGAGACAGGGCGGCGTTTGGCAAACTACTGCAGGAAGTTCAATGTCCCTTTTGAGTACAATTGCCTTGCACAGAAATGGGAGAGTATAAAACTTGCAGATCTCAAGATTAACAGGAATGAAGTAACTGTTGTTAGCTGTTTCTACCGGCTGAAGAACCTTCCTGATGAAACTGTGGCAGTGGACTGTCCAAGAGATGCTGTGTTAAAGTTGATAAGGAAGATCAATCCAAACATCTTCATCCATGGGGTGGTCAATGGCACTTATAGTGCACCTTTTTTCTTGACACGGTTCCGGGAAGCGTTGTACCACTTCTCATCACTGTTTGATATGTTTGAGGTTAATGTGCCACGTGAAGATTCGCAAAGGTTGATGTTTGAGAAAGGGTTGCTCGGAAGGGATGCCATCAATGTTATAGCGTGTGAGGGGGCAGAGAGAGTTGAGAGACCTGAGACTTACAAGCAGTGGCAGATTAGGAACCTGAGAGCTGGGTTCAAACAAGTTAGTTTTGATCCTCAGCTGGTGAATTATGCGAAACAAATGGTGAAGAAGGAATATCACAAAGATTTTGTGGTGGCTGAGGATGGCAAGTGGGCTTTGCAGGGATGGAAAGGGCGAATTCTGAATGCCATTTCTGCATGGGTTCCTGCTTGA 1926 0.4538 MLSTNTLVQNFGGPISVFSDQNLVTKGIELDDSSSPSSGTSSSGELTKYSNHILRYISDILMDEEDDLLNKPCMLQECLRLQAAEKSFLDVLVHHSPSSFSGESIGIADSDENFGRTVSFESNGSCTTDNSCESDLVNGGGEFDSSFLPQQTHHVVYSPDAFRVRDGTWNLFQSHTKPLMVEEGRSTSASREKRSHEMNDEDGRRGGKVSAVFSDESESPEILDEVLLCQIGRSECSSEPSQGVDSGGSSGKGARSRSKKGSTKAGTAVDLWTLLTQCAQAVASFDQRNANDLLGQIKQHSSPFGDGLQRLAHYFAKGLEIRLSAGTPSYVPLEVATAADMLKAYKLFVTSSPLQRMSNYLTTKTVLSLVKNESSVHIIDFGICYGFQWPCLIKTLSERDGGPPRLRITGIDLPRPGFRPAERVEETGRRLANYCRKFNVPFEYNCLAQKWESIKLADLKINRNEVTVVSCFYRLKNLPDETVAVDCPRDAVLKLIRKINPNIFIHGVVNGTYSAPFFLTRFREALYHFSSLFDMFEVNVPREDSQRLMFEKGLLGRDAINVIACEGAERVERPETYKQWQIRNLRAGFKQVSFDPQLVNYAKQMVKKEYHKDFVVAEDGKWALQGWKGRILNAISAWVPA 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03570 641 MobiDBLite consensus disorder prediction 236 262 - -
Viun5g03570 641 ProSiteProfiles GRAS family profile. 262 639 IPR005202 -
Viun5g03570 641 MobiDBLite consensus disorder prediction 186 211 - -
Viun5g03570 641 MobiDBLite consensus disorder prediction 180 218 - -
Viun5g03570 641 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 209 632 IPR005202 -
Viun5g03570 641 Pfam GRAS domain family 273 638 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03570 Viun-Chr5 45321378 45323658 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03570 29 641 GRAS Transcription Factor Family AT5G59450 43.478 1.71e-171 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun5g03570 GRAS 5.2e-109 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03570 - - aprc:113855970 983.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03570 5 45321378 45323658 Viun5g03570 5 45321378 45323658 ECH
Viun5g03570 5 45321378 45323658 Viun11g02139 11 36538129 36541513 PCT