Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03568 ATGGATAGAAGAGTCTCCTCCACCATCAATTTTGCTAATGATGAAGCAGAGTCATGCTTTTATGAGAGTGATGTCTCTGCTGTCCTTGGCTACATAAAGCAAATGCTGATGGAAGAGGACACAGAAGAAAAGTACAGTATGTTCCATGATTCCTTAGCTCTGCAACATACTGAGAGATCATTTTATCAGGTTATCACTCACCAAACATCTTCTTCACCTTCTTCCACACACCATCATCATGTTCAGAGTTTCCCCAGTTTCAGAGTGGAGAGTCCTGACCAAAATGTCTCTGGTTGCTCCAGTGATAACAGTTCTGGTAGTTATAGTTATGGCAGTACATCCATCTCCTCCGAGTCTCAGTGGAGTGTTGACTTTAACACCCCTGCACTGCCAAACACTTTTACCTTTCCGGATACCTTTGTTTCCCACTCAAATTCATCCTCCACCGCTCAATCTTCCATGAATACTGGATTTGGAATCTTGGATAATACCCTTCTTGATTCTGCATTTCAAGAGCAATTCAAGAGAGGTCTTGAACAAGGTACCAGATTCCTTCCTAAACATACTCCATTCGTTGTTGACACGGACAGCACAGCCTTTTCCCCTTCTTTCACAATGGTTCCAACTGTGGTAATCAAGACAGAAGCAGAAGAAGGTGTTGAAGAGGAGCATTTTCTGTCTGTGTCAAGAAGGAGAAACCGGGATCAGGAAGAGTATGAGGCAGATGGGAGAATCAGGAAGACATCAGCAACGTACACGGATGAAAGTGAGCTATCTGAATTGCTTGATAAAGTGGTGCTAGGCACTGGTTTGGGAAAAGGGGTGCCTTCTGACACAGGCCTTTACCAAAATGATGCAACATTATTAACAAACATGTTTGATGTCAGGAAAAGTAGCGAGGAAGTTGTGGATCTGAGGGCACTATTGATGCTTTGTGCACAAGCTGTTGCTTCTGATAGTGCTTCATTTGCAAAGCAACTACTGAAGCAGATTAAGCAGCATTCTTCTCCAATAGGGGATGATACTCAGAGGCTTGCACATTACTTTGGAAATGCCCTTGAAGCATGCTTGGATGGAACCGGTTTCCAGGTTTATCGTGTTCTATCCTCCAAAAGAATCTCTGCCAAAGACATGATAAAAGCTTACTGTGCATATGCTTCGGTGTGCCCGTTTGAAAAGCTTACAATCATTTTTGCCAACAAAGCAATTTGTTTTCTATCTGAGAATGCAGAAACTGTTCATATCATAGACTTTGGTATCCGCTATGGCTTCAAGTGGCCTTCGCTTATCAGCATCCTGTCAAAACGTCCCGGTGGACCACCCAAGCTTCGCATCACGGGGATAGATCAGCCGCAGCCAGGTTTCAGGCCAGAGGAGAGGGTTCTGGAAACCGGGCGTAGACTCGAACATTATTGCAAGCGTTTCAATGTTCCATTTGAGTTCAATGCCATTGCAAGAAAATGGGACACCATCAGAGTCGAGGACCTCAAGATAGAGAAAAACGAGTTCGTAGCATTGAACTGCATGTTTCAGTTGGAGCATCTACTTGACGAGTCTGTGGTGTTGGATAATCCAAGAGATGCTGTTTTGAGGTTGATCAAGAAGGCAAACCCTGACATATTTGTGCACAGCATTGTCAACGGCTCCCATGATGTTCCATTCTTTGTGTCACGGTTCCGAGAGGCTCTCTTCCACTACTCTGCACTGTTTAACATGCTTGAAACCAACATGGACCGTGAAGATCCTACGAGGTTGATGTTTGAGAAGGAGTTGTTTGGACCGGAGATCATGAACATCGTAGCTTGTGAAGGTTGTGAGAGGGTTGAGAGGCCACAAACCTACAAGCAATGGCAGCTTCAGAACATGAGAATTGGGTTTCGGTTACTTCCTTTGGATCAACGAATCATTGACAGAATGAAGAACAGGTTGAGACAGGATGGGCACGACACCAATTTCATGCTTGAGGAGGATGGTGGTTGGGTGTTACAAGGTTGGAAGGGTCGAATTGTACATGCTTCCTCTTGTTGGATTCCGGCATAG 2040 0.4456 MDRRVSSTINFANDEAESCFYESDVSAVLGYIKQMLMEEDTEEKYSMFHDSLALQHTERSFYQVITHQTSSSPSSTHHHHVQSFPSFRVESPDQNVSGCSSDNSSGSYSYGSTSISSESQWSVDFNTPALPNTFTFPDTFVSHSNSSSTAQSSMNTGFGILDNTLLDSAFQEQFKRGLEQGTRFLPKHTPFVVDTDSTAFSPSFTMVPTVVIKTEAEEGVEEEHFLSVSRRRNRDQEEYEADGRIRKTSATYTDESELSELLDKVVLGTGLGKGVPSDTGLYQNDATLLTNMFDVRKSSEEVVDLRALLMLCAQAVASDSASFAKQLLKQIKQHSSPIGDDTQRLAHYFGNALEACLDGTGFQVYRVLSSKRISAKDMIKAYCAYASVCPFEKLTIIFANKAICFLSENAETVHIIDFGIRYGFKWPSLISILSKRPGGPPKLRITGIDQPQPGFRPEERVLETGRRLEHYCKRFNVPFEFNAIARKWDTIRVEDLKIEKNEFVALNCMFQLEHLLDESVVLDNPRDAVLRLIKKANPDIFVHSIVNGSHDVPFFVSRFREALFHYSALFNMLETNMDREDPTRLMFEKELFGPEIMNIVACEGCERVERPQTYKQWQLQNMRIGFRLLPLDQRIIDRMKNRLRQDGHDTNFMLEEDGGWVLQGWKGRIVHASSCWIPA 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03568 679 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 288 666 IPR005202 -
Viun5g03568 679 MobiDBLite consensus disorder prediction 66 104 - -
Viun5g03568 679 ProSiteProfiles GRAS family profile. 296 677 IPR005202 -
Viun5g03568 679 Pfam GRAS domain family 305 676 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03568 Viun-Chr5 45296959 45299620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03568 28 679 GRAS Transcription Factor Family AT1G07530 47.619 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun5g03568 GRAS 2.5e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03568 - - gmx:100780343 850.892
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03568 5 45296959 45299620 Viun5g03568 5 45296959 45299620 ECH