Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03552 ATGGGAGTTTGTTTGAGCGCCCAAATTAAAGCTGAAAGCCCGTATAGCACTGATCCAGTTGTATGGCTCGGGTTCAATTCAAAGTATGTGAGTACAGATGGAAATTATCTTGGCAGCACAAACGATAAGGTTTCAGGAAACTCAGTCCCTCTGACTCCTCGGAGTGAGGGTGAGATCTTGCAGTCATCCAATTTGAAGAGCTTTACCTTCTCAGAACTTAAGACGGCCACTAGGAATTTCCGTCCTGATAGTGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAAGGGTGGATTGATGAAAATTCGTTAACTGCTACAAAACCTGGCACTGGTATTGTTATTGCTGTGAAAAGACTTAATCAAGATGGCATCCAGGGTCACAGGGAGTGGTTGGCTGAAGTCAACTATCTTGGACAGTTTTCTCATCCTCATCTAGTGAGATTGATTGGGTTTTGCCTTGAAGATGAGCATCGCCTTCTCGTCTATGAATTTATGCCTCGTGGAAGCTTGGAAAACCATTTGTTCAGGAGAGGTTCATATTTTCAGCCACTTTCTTGGAGCCTCCGTTTGAAAGTTGCTCTTGATGCTGCCAGAGGGCTTGCGTTTCTACACAGTGCTGAAACAAAAGTGATATATAGAGATTTTAAGACTTCAAATATATTGCTGGACTCAAATTACAATGCAAAACTTTCTGACTTTGGGCTGGCAAAGGATGGACCAACAGGTGACAAAAGTCATGTATCCACCAGGGTAATGGGAACCTACGGATATGCAGCTCCTGAATATCTAGCCACAGGTCATCTCACTGCCAAGAGTGATGTCTATAGTTTTGGAGTTGTCCTGCTGGAAATGTTATCTGGAAAGAGGGCAGTTGACAAGAATAGACCATCAGGACAACACAATTTGGTGGAATGGGGTAAACCATACCTGGGAAACAAACGTAAGATATTTCGTGTGTTAGACACACGGCTTGAAGGACAACATTCAACGGATGATGCCTATAAGGTAGCCAACCTTGCCTTGCGGTGCCTGTCAATAGATTCCAAGTTCAGGCCAAACATGGATCAAGTGGTCACAACATTGGAGCAGCTGCAGGTTCCTAATGCAAATGGAGGCACTCAAAATCATTCTCGTGTTAGAAGAAGAAGTGCTGATGTAAGTAGAGGCTATCAAAATCCTTCTTTTAATGGATCTCGAGTTCGTAGAAGAAGTGCTGATGACATTAGCCGCATGGAGACCCCCTCAGCTTATCCCAGACCCTCTGCTTCCCCTCTCTATACTTGA 1287 0.439 MGVCLSAQIKAESPYSTDPVVWLGFNSKYVSTDGNYLGSTNDKVSGNSVPLTPRSEGEILQSSNLKSFTFSELKTATRNFRPDSVLGEGGFGSVFKGWIDENSLTATKPGTGIVIAVKRLNQDGIQGHREWLAEVNYLGQFSHPHLVRLIGFCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAARGLAFLHSAETKVIYRDFKTSNILLDSNYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGKRAVDKNRPSGQHNLVEWGKPYLGNKRKIFRVLDTRLEGQHSTDDAYKVANLALRCLSIDSKFRPNMDQVVTTLEQLQVPNANGGTQNHSRVRRRSADVSRGYQNPSFNGSRVRRRSADDISRMETPSAYPRPSASPLYT 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03552 428 MobiDBLite consensus disorder prediction 366 428 - -
Viun5g03552 428 Gene3D Phosphorylase Kinase; domain 1 55 165 - -
Viun5g03552 428 ProSiteProfiles Protein kinase domain profile. 80 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03552 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Viun5g03552 428 FunFam Serine/threonine-protein kinase BIK1 47 165 - -
Viun5g03552 428 Pfam Protein tyrosine and serine/threonine kinase 84 362 IPR001245 GO:0004672|GO:0006468
Viun5g03552 428 Gene3D Transferase(Phosphotransferase) domain 1 166 387 - -
Viun5g03552 428 ProSitePatterns Protein kinases ATP-binding region signature. 86 118 IPR017441 GO:0005524
Viun5g03552 428 SUPERFAMILY Protein kinase-like (PK-like) 57 367 IPR011009 -
Viun5g03552 428 CDD STKc_IRAK 86 365 - -
Viun5g03552 428 PANTHER OS01G0588500 PROTEIN-RELATED 48 366 - -
Viun5g03552 428 FunFam Probable serine/threonine-protein kinase PBL8 166 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03552 Viun-Chr5 45227225 45230372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03552 58 362 Glycoside Hydrolase AT3G07070 49.346 5.01e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun5g03552 PK_Tyr_Ser-Thr 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03552 - - gmx:100798404 781.556