Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03546 ATGGAACTTTTGAAACCTCTGCACCCTCACCATGCACCCATTTTGTGCCTTCCCTTCCACGGCCACCCCTCTTCTTCCCAATCTCAATCTCAGCTTCCCCTCCCCATGATTCCCAAGGTTCATGTAGCTGTTGGCAAATCCATTGATAAAGCTGTTACCTTGCTTCAATGGGCCTTTAACCACTTTCAGAACGCTGAAATCGTTATATTACATGCTTATCAACCTTCTCTCACGATCCCCACTCTGTTGGGGAAATTGCCTGCATCACAGGCTAGTCCTGCTGTGGTGTCTGCTTTTCGAAGTGTGGAGAGAGAACAGACCATGAAGCTTATAGACAAGTACTTGACCGTTTGCCGCAGAGCTAGGGTTAAGGCGAGCGTTATAGTAACAGAAGTTGATCAAGTCCAGAAGGGAATTGTTGATTTGGTCCTTAAGCATAATATTCAGAAGCTTGTCATTGGAGCAGTGCCAGAAAATTGCATGAAAGTGAAAAGGAATTCTGGTAAAGCAAATTACACTGCCAAAAATGCTCCTCCTTTCTGTGAAGTATGGTTTATCTATAAAGGAAAAGTCATTTGGACGAGAGAGGCTTCTGAAACACCGTGTTCACCATGTTCTTCATCCTTGTCTGCTCAACCTCAACCTGAGATTGCCACCGCAGAAAGCTTGAGATGTAGATCTTTTCAATATGGTAAGAACGAACTATTCGACTCAGAGTGTCTTCAACCAAATTCGGCAAGATCTGCTACTGGTTTTGGAATTAGAAGTTGGGCTCATGGGGAAATCACTGAAACTGGAGCCACTTTTTCATCCAAAGCATCCAGTTGTAGCAGTCATTGTTCCTCCCAAAATTCTTCTCGGGCTCACTTAGATACATACTTAGAGGCCATGGAAGAAAAAATTAATAACCAACTTATTGAAACCAAGAGAGAAGCCGAGGCAGTAGCAGATGAAGCCTCTGCAGAGCTATTAAAGTGTGAGAGGTTAGAAGTTGAAGCCATGGAAGCCATCAGGAAGGTCAATTTGTTTGACTCTGCCCATGTTCGTGAAGTAAAGCTTAGAAAAGAGGCTGAGGATGCACTCAGAGCTACGGTAGAAGAACAACAAAAGCTCTTGAGTGAGAGTGAAGAAATTGCTAGCAAGCTTCAAATGACCATGAGAAATATTGCGCTGTTAGATAGTCGTGCTCAGGAAGCAAACCGTAGACGTGATGAAGCTGCAGATGAACTATCACTAATTCAAGAATCCATCTCAACCCTGTGGCAAGAAAGGCAGCAGATAAGAAGACAGAAAATGGAAGCCCTACGCTGGCTTGAGCGGTGGAGAAGTCGAGGACAAGTTGGAGCAGCTCATTGCAATGGGGTCATCGGCTTTCCGGAAGAATTACCTGAGTTAGCCGAGTTTTCATCATCAGATCTTCAAAATGCCACATGTAATTTTTCCAACAGCTTTAAAATTGTGCAAGGTGGATTCGGTTGTATATACAAGGGGGAAATGTTGGGTAGGACTGTTACTATAAAAAAGTTCCATCAACATAATATGCAAGGACCAATGGAGTTTCGTCAAGAGGTTCAAGTTCTTGGTAGTCTCCAGCACCCTCATTTAATAACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCAATTGTATATGAGTACCTCCCCAATGGAACTCTTCAAGACTACCTATTCCGAAAAAGCAACAATTCTCCTTTAACGTGGAATACCCGAGCACGAATGATTGCTGAAATCGCTAGTGCTCTCTGTTTCCTACATTCTTTTAAACCCGAAACTATTATCCATGGTGATCTGAAGCCAGAAACTGTACTACTTGATTCTTCACTTCGTTGTAAAATATGCGGATTTGGGTTCTGCAGTCTGGTAAGTGAGGAGTCTCTCCTCCGTCCTAGTTTCCGTTTGAGCACTGAACCAAAGGGTGCTTTCACATATACTGATCCAGAGTTTCATAGAACTGGAATACTAACAACAAAGTCTGACATCTACTCCTTTGGGCTCATCATTTTACAACTCCTCACTGGTAATAATCCAGTTGGATTAGCAGCTCTAGTACGCAATGCAGCTTCATGTGGAAAATTGTCTTCAATTCTTGATTCTTCAGCTGGAGAATGGCCCTCGCCCGTGGCATCGCGTATGGTTGAACTAGGATTGCAATTCTGTCAACAAAATCGTAGAGACAGACCAGATTTAACACCTACACTAGTGAGAGAATTGGAGCAGATGCATGCTTCAGAAGAGCGACCAGTGCCATCTTTTTTCTTATGTCCAATCCTTCAGGAAATAATGCACGATCCTCAAGTTGCAGCAGACGGGTTTACCTATGAAGGAGATGCCATACGTGAATGGTTGGAAAATGGGCATGACACTTCTCCCATGACTAATCTGAAATTGAATCACCTGTTTCTTACTCCCAACCACGCACTTCGACTTGCCATCCAAGACTGGCTTTGCAAATCTTGA 2475 0.4352 MELLKPLHPHHAPILCLPFHGHPSSSQSQSQLPLPMIPKVHVAVGKSIDKAVTLLQWAFNHFQNAEIVILHAYQPSLTIPTLLGKLPASQASPAVVSAFRSVEREQTMKLIDKYLTVCRRARVKASVIVTEVDQVQKGIVDLVLKHNIQKLVIGAVPENCMKVKRNSGKANYTAKNAPPFCEVWFIYKGKVIWTREASETPCSPCSSSLSAQPQPEIATAESLRCRSFQYGKNELFDSECLQPNSARSATGFGIRSWAHGEITETGATFSSKASSCSSHCSSQNSSRAHLDTYLEAMEEKINNQLIETKREAEAVADEASAELLKCERLEVEAMEAIRKVNLFDSAHVREVKLRKEAEDALRATVEEQQKLLSESEEIASKLQMTMRNIALLDSRAQEANRRRDEAADELSLIQESISTLWQERQQIRRQKMEALRWLERWRSRGQVGAAHCNGVIGFPEELPELAEFSSSDLQNATCNFSNSFKIVQGGFGCIYKGEMLGRTVTIKKFHQHNMQGPMEFRQEVQVLGSLQHPHLITLLGVCPEAWSIVYEYLPNGTLQDYLFRKSNNSPLTWNTRARMIAEIASALCFLHSFKPETIIHGDLKPETVLLDSSLRCKICGFGFCSLVSEESLLRPSFRLSTEPKGAFTYTDPEFHRTGILTTKSDIYSFGLIILQLLTGNNPVGLAALVRNAASCGKLSSILDSSAGEWPSPVASRMVELGLQFCQQNRRDRPDLTPTLVRELEQMHASEERPVPSFFLCPILQEIMHDPQVAADGFTYEGDAIREWLENGHDTSPMTNLKLNHLFLTPNHALRLAIQDWLCKS 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03546 824 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 755 824 IPR013083 -
Viun5g03546 824 PANTHER OS02G0152300 PROTEIN 40 818 - -
Viun5g03546 824 Pfam Protein tyrosine and serine/threonine kinase 485 736 IPR001245 GO:0004672|GO:0006468
Viun5g03546 824 CDD RING-Ubox_WDSUB1-like 755 810 - -
Viun5g03546 824 Coils Coil 382 416 - -
Viun5g03546 824 SUPERFAMILY RING/U-box 744 823 - -
Viun5g03546 824 SMART Ubox_2 757 820 IPR003613 GO:0004842|GO:0016567
Viun5g03546 824 ProSiteProfiles Protein kinase domain profile. 480 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03546 824 Gene3D Phosphorylase Kinase; domain 1 458 552 - -
Viun5g03546 824 Pfam U-box domain 754 823 IPR003613 GO:0004842|GO:0016567
Viun5g03546 824 Coils Coil 354 374 - -
Viun5g03546 824 Gene3D Transferase(Phosphotransferase) domain 1 553 754 - -
Viun5g03546 824 Coils Coil 298 329 - -
Viun5g03546 824 CDD STK_N 39 189 - -
Viun5g03546 824 SUPERFAMILY Protein kinase-like (PK-like) 463 742 IPR011009 -
Viun5g03546 824 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 36 157 - -
Viun5g03546 824 Gene3D HUPs 25 184 IPR014729 -
Viun5g03546 824 ProSiteProfiles U-box domain profile. 753 824 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03546 Viun-Chr5 45178829 45183334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03546 39 821 U-box Gene Family AT2G45910 35.821 2.42e-167 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Viun5g03546 PK_Tyr_Ser-Thr 6.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03546 - - gmx:100788846 1419.06