Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03536 ATGGGGAGTCGCTCTGCAATAAGAAGAGAACCAAGTAGAACTCATGCAGTTTCTCGGTGGAGTCCTACAAAAGAGCAAATAGCAGTGTTGGAGGACCTTTACAGACAGGGAATGAGGACTCCAAATACTGAGCAGATACAAGAGATTACCTCTAGATTAAGGGTTTATGGTCACATTGAAGGAAAAAATGTCTTTTACTGGTTTCAGAATCACAAAGCACGTCAAAGACAGAAGCAGAAGCTAGAAACCATTGCATATTCCAATAGCTTTCTTCAAGCCTCACACCCCATTGGCCAACATGTTGTCTGTGCTCCATTTTATGCTCAACAAAGTGGAATGAACTTTTATCCTCAACCAAGAAATATTGTAGCAGCTGGAGGTATTGTTGAGTCAGTTGTGCCATTTAGGATGCTGCAAATGTGTGATGGCCAGCAGATATACCAACAATTGCGTCAGAGGGTACAACCTGATTATAACTGTAGCATCAACGACAGGAAAACCTTAACTCTCTTTCCTCTTCATCCAACAGGTGTTTTGAAAGAAAAAACTACTGATCATGGTTCTTCACATGCTTCAGCTTCTGGTCGTCACTGA 594 0.4175 MGSRSAIRREPSRTHAVSRWSPTKEQIAVLEDLYRQGMRTPNTEQIQEITSRLRVYGHIEGKNVFYWFQNHKARQRQKQKLETIAYSNSFLQASHPIGQHVVCAPFYAQQSGMNFYPQPRNIVAAGGIVESVVPFRMLQMCDGQQIYQQLRQRVQPDYNCSINDRKTLTLFPLHPTGVLKEKTTDHGSSHASASGRH 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03536 197 MobiDBLite consensus disorder prediction 1 20 - -
Viun5g03536 197 CDD homeodomain 19 79 IPR001356 GO:0003677
Viun5g03536 197 ProSiteProfiles 'Homeobox' domain profile. 13 78 IPR001356 GO:0003677
Viun5g03536 197 SUPERFAMILY Homeodomain-like 18 82 IPR009057 -
Viun5g03536 197 SMART HOX_1 15 82 IPR001356 GO:0003677
Viun5g03536 197 FunFam WUSCHEL-related homeobox 4 17 84 - -
Viun5g03536 197 Pfam Homeodomain 18 77 IPR001356 GO:0003677
Viun5g03536 197 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 13 191 IPR044555 GO:0003700|GO:0099402
Viun5g03536 197 Gene3D - 18 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03536 Viun-Chr5 45108265 45109215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03536 14 175 Wox Gene Family AT5G59340 41.919 1.75e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Viun5g03536 Homeodomain 5.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03536 - - var:108332933 330.487