LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g03536	ATGGGGAGTCGCTCTGCAATAAGAAGAGAACCAAGTAGAACTCATGCAGTTTCTCGGTGGAGTCCTACAAAAGAGCAAATAGCAGTGTTGGAGGACCTTTACAGACAGGGAATGAGGACTCCAAATACTGAGCAGATACAAGAGATTACCTCTAGATTAAGGGTTTATGGTCACATTGAAGGAAAAAATGTCTTTTACTGGTTTCAGAATCACAAAGCACGTCAAAGACAGAAGCAGAAGCTAGAAACCATTGCATATTCCAATAGCTTTCTTCAAGCCTCACACCCCATTGGCCAACATGTTGTCTGTGCTCCATTTTATGCTCAACAAAGTGGAATGAACTTTTATCCTCAACCAAGAAATATTGTAGCAGCTGGAGGTATTGTTGAGTCAGTTGTGCCATTTAGGATGCTGCAAATGTGTGATGGCCAGCAGATATACCAACAATTGCGTCAGAGGGTACAACCTGATTATAACTGTAGCATCAACGACAGGAAAACCTTAACTCTCTTTCCTCTTCATCCAACAGGTGTTTTGAAAGAAAAAACTACTGATCATGGTTCTTCACATGCTTCAGCTTCTGGTCGTCACTGA	594	0.4175	MGSRSAIRREPSRTHAVSRWSPTKEQIAVLEDLYRQGMRTPNTEQIQEITSRLRVYGHIEGKNVFYWFQNHKARQRQKQKLETIAYSNSFLQASHPIGQHVVCAPFYAQQSGMNFYPQPRNIVAAGGIVESVVPFRMLQMCDGQQIYQQLRQRVQPDYNCSINDRKTLTLFPLHPTGVLKEKTTDHGSSHASASGRH	197

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g03536	197	MobiDBLite	consensus disorder prediction	1	20	-	-
	Viun5g03536	197	CDD	homeodomain	19	79	IPR001356	GO:0003677
	Viun5g03536	197	ProSiteProfiles	'Homeobox' domain profile.	13	78	IPR001356	GO:0003677
	Viun5g03536	197	SUPERFAMILY	Homeodomain-like	18	82	IPR009057	-
	Viun5g03536	197	SMART	HOX_1	15	82	IPR001356	GO:0003677
	Viun5g03536	197	FunFam	WUSCHEL-related homeobox 4	17	84	-	-
	Viun5g03536	197	Pfam	Homeodomain	18	77	IPR001356	GO:0003677
	Viun5g03536	197	PANTHER	WUSCHEL-RELATED HOMEOBOX 1-RELATED	13	191	IPR044555	GO:0003700\|GO:0099402
	Viun5g03536	197	Gene3D	-	18	83	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g03536	Viun-Chr5	45108265	45109215	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g03536	14	175	Wox Gene Family	AT5G59340	41.919	1.75e-39	134

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-WOX	Viun5g03536		Homeodomain	5.6e-19	CL0123