Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03522 ATGTCTGCGGCTCTGGATATGACGCTCGACGATATTATCAAGAACAACAAGAAGTCAGCCTCCGCCAACTCCAGGGGCCGAGGCCGAGCTTCGGGACCCGGACCCGCTCGTCGTCTCCCCAACCGGGCCGCAAATCGTGCCGCGCCGTACGCCACCGCTAAGGCGCCGGAGTCTGCGTGGCAGCACGATATGTACGCCGATCAGCCAGCCGCCACGGCTTTTGCAGGTCAAGGTGGTCGGGCGTCTTCCATCGAAACAGGGACGAAGCTTTACATATCTAATCTGGATTATGGCGTCTCCAATGACGATATTAAGGAGTTATTTCTTGAAGTTGGTGACCTGAAGCGGCATACTGTTCACTACGACAGGAGTGGAAGATCCAAGGGTACAGCGGAAGTAGTCTTCTCTCGACGTGCTGATGCTGTAGCTGCAGTGAAGAGGTATCACAATGTTCAGCTAGACGGGAAACCAATGAAGGTAGAGATTGTGGGGACAAATATCGCCACACATGCTGCAGCGCCCACTGTTAATGGGACTTTTGGAAATTCTGGTGGTCCTCCCAGAAGTGTACAAGGGAGAAATGGGCCACTAGGAAGGCCACGTGGTGCGCCTAGAGGGCGAGGTGGCAGTCGGAGGGGTGGTCGAGGACGTGGTAGAGGTCGTGATGAAAAGGTATCTGCGGAAGACCTTGATGCTGAGTTGGAGAAGTATCATGCTGAGGCTATGCAATTGAACTGA 738 0.5447 MSAALDMTLDDIIKNNKKSASANSRGRGRASGPGPARRLPNRAANRAAPYATAKAPESAWQHDMYADQPAATAFAGQGGRASSIETGTKLYISNLDYGVSNDDIKELFLEVGDLKRHTVHYDRSGRSKGTAEVVFSRRADAVAAVKRYHNVQLDGKPMKVEIVGTNIATHAAAPTVNGTFGNSGGPPRSVQGRNGPLGRPRGAPRGRGGSRRGGRGRGRGRDEKVSAEDLDAELEKYHAEAMQLN 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03522 245 Gene3D - 69 229 IPR012677 -
Viun5g03522 245 Coils Coil 227 245 - -
Viun5g03522 245 SMART FoP_duplication_2 176 245 IPR025715 -
Viun5g03522 245 MobiDBLite consensus disorder prediction 14 53 - -
Viun5g03522 245 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 243 - -
Viun5g03522 245 CDD RRM_THOC4 88 162 - -
Viun5g03522 245 MobiDBLite consensus disorder prediction 174 231 - -
Viun5g03522 245 FunFam THO complex subunit 4 81 227 - -
Viun5g03522 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 165 IPR000504 GO:0003723
Viun5g03522 245 SUPERFAMILY RNA-binding domain, RBD 81 189 IPR035979 GO:0003676
Viun5g03522 245 Pfam C-terminal duplication domain of Friend of PRMT1 183 239 IPR025715 -
Viun5g03522 245 MobiDBLite consensus disorder prediction 174 189 - -
Viun5g03522 245 SMART rrm1_1 89 161 IPR000504 GO:0003723
Viun5g03522 245 MobiDBLite consensus disorder prediction 215 231 - -
Viun5g03522 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03522 Viun-Chr5 45056642 45058895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03522 87 162 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 2.16e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03522 K12881 - gmx:100783362 328.561