Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03520 ATGGGGAGAAAACTCTTTGTATCGAGATTATCTTTTTACGCTACACAGGAACAGCTGAAGAAGTTGTTCGCTCCGTTCGGAGAAGTTGCCAGTGTTAATCTCGTGGTCGATCCTAAAACTAAAAGGACCAAAGGGTATGGGTTTGTCTCCTACAACACTCAAATTGAAGCGGAAAAGGCTCTGAAAGCCATGAATGGCAGGATTGTTGATGGAAGGCTGCTTTTGGTTGAACCTGCCGGCGAGAAATGA 249 0.4498 MGRKLFVSRLSFYATQEQLKKLFAPFGEVASVNLVVDPKTKRTKGYGFVSYNTQIEAEKALKAMNGRIVDGRLLLVEPAGEK 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03520 82 Gene3D - 1 82 IPR012677 -
Viun5g03520 82 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 4 80 - -
Viun5g03520 82 SMART rrm1_1 4 77 IPR000504 GO:0003723
Viun5g03520 82 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 74 IPR000504 GO:0003723
Viun5g03520 82 SUPERFAMILY RNA-binding domain, RBD 3 79 IPR035979 GO:0003676
Viun5g03520 82 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 3 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03520 Viun-Chr5 45045137 45047438 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03520 4 82 Eukaryotic Initiation Factors Gene Family AT2G23350 29.114 3.24e-06 41.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03520 K13195 - pvu:PHAVU_005G141700g 135.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03520 5 45045137 45047438 Viun5g03520 5 45045137 45047438 ECH