Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03518 ATGAAGAGAGGCAGAGAAGAGGGTGAATTAGACAACATGGCTAAGTGTTTGATGCTATTGACGAAAGTTGGTGAGAGTGATGCGAAAACAAAACATCAAGTTGGTGAAATGGGTGATTTCAAGTGCAAAACTTGCAATAGAAGGTTTTCTTCTTTTCAAGCACTTGGTGGTCACAGAGCAAGTCACAATAAACCAAAGCTCATGATCACAGATCTTTCTTGCCATCACCAGTTACCTAGTCCAACCACGAAACAACAATCTAGGATGCACCCATGTCCCATTTGTGGCCTTCAGTTTGCCATTGGACAAGCCTTGGGAGGGCACATGAGAAAGCATAGAACTGCCATTAATCATGGTTTGTTCAATAATCGTAGAGATTCGGGTTCTTTGTCCATTCTCAAGAAATCTAAAGATGGTGGAAGGTTGAATCTGTGTTTGGACTTGAACTTGATGCCATTAGAGGATGATGATCTTAAGCTCAATCTCAGAACACCCGTTCTCGATTGTTTCATTTGA 516 0.4147 MKRGREEGELDNMAKCLMLLTKVGESDAKTKHQVGEMGDFKCKTCNRRFSSFQALGGHRASHNKPKLMITDLSCHHQLPSPTTKQQSRMHPCPICGLQFAIGQALGGHMRKHRTAINHGLFNNRRDSGSLSILKKSKDGGRLNLCLDLNLMPLEDDDLKLNLRTPVLDCFI 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03518 171 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Viun5g03518 171 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Viun5g03518 171 Pfam C2H2-type zinc finger 90 114 - -
Viun5g03518 171 Pfam C2H2-type zinc finger 40 64 - -
Viun5g03518 171 SMART c2h2final6 90 112 IPR013087 -
Viun5g03518 171 SMART c2h2final6 40 62 IPR013087 -
Viun5g03518 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Viun5g03518 171 PANTHER ZINC FINGER PROTEIN ZAT5 8 156 - -
Viun5g03518 171 Gene3D Classic Zinc Finger 19 117 - -
Viun5g03518 171 SUPERFAMILY beta-beta-alpha zinc fingers 40 112 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03518 Viun-Chr5 45031561 45032370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03518 1 162 C2H2 Transcription Factor Family AT2G28710 48.171 5.89e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun5g03518 zf-C2H2_6 2.9e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03518 - - vra:106758971 274.633