Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03514 ATGGTTCAACAGGAAATTCGTAAAGGTCCATGGACAGAACAAGAAGACTTCAAATTGGTGTCGTTTGTTGGGTTGTTCGGAGACCGTAGATGGGACTTTATTGCTAAGGTATCAGGTTTGAATAGAACAGGTAAAAGTTGCAGATTACGCTGGGTTAATTACCTTCATCCTGGTCTCAAACGTGGAAAGATGACACCCCAGGAAGAAAGACTCGTGCTTGAGCTTCACTCAAAATGGGGAAATAGGTGGTCAAGAATCGCTCGGAAGTTACCAGGGCGCACTGATAATGAGATAAAGAACTACTGGAGGACCCTGATGAGGAAAAAGGCGCAGGAGAAAAAAAGAGGAGAAGCTGCATCATCATCAACAGCAACACCTTCTTCTTCTTCCAGTGTTCATTCCTCAATATCAGTATCCTCAAAGAAGCATGAAGTGGATCCACACGCTTCCAAAAAAGCAGGAGAAGAGAGCTTTTATGACACAGGAGGAGCTTCAACCCAAGATGAAGGTGAAGGTGAGTTCTCGATGGATGATATATGGAAAGATATTGACATGTCAGAAGAGAACAACAGTTTTGTTCATGGGGAGAGTGAACAGGTGGTTTCTCCATCTGCATCATCGTGGGAGTATTGTTGTTGTGATCCTCTGTGGGTGATGATGGATGAGGAAAGTTTGTTTATGAGTGAACCATATTTTTATGCATTAAGCGGCTGA 714 0.4328 MVQQEIRKGPWTEQEDFKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHSKWGNRWSRIARKLPGRTDNEIKNYWRTLMRKKAQEKKRGEAASSSTATPSSSSSVHSSISVSSKKHEVDPHASKKAGEESFYDTGGASTQDEGEGEFSMDDIWKDIDMSEENNSFVHGESEQVVSPSASSWEYCCCDPLWVMMDEESLFMSEPYFYALSG 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03514 237 SMART sant 60 108 IPR001005 -
Viun5g03514 237 SMART sant 7 57 IPR001005 -
Viun5g03514 237 MobiDBLite consensus disorder prediction 109 172 - -
Viun5g03514 237 FunFam MYB transcription factor 63 135 - -
Viun5g03514 237 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Viun5g03514 237 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Viun5g03514 237 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Viun5g03514 237 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 171 IPR044676 GO:0003700|GO:0006355|GO:0043565
Viun5g03514 237 Gene3D - 8 60 - -
Viun5g03514 237 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
Viun5g03514 237 MobiDBLite consensus disorder prediction 117 138 - -
Viun5g03514 237 CDD SANT 63 106 IPR001005 -
Viun5g03514 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Viun5g03514 237 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Viun5g03514 237 CDD SANT 10 55 IPR001005 -
Viun5g03514 237 FunFam Myb transcription factor 8 60 - -
Viun5g03514 237 Gene3D - 63 135 - -
Viun5g03514 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Viun5g03514 237 MobiDBLite consensus disorder prediction 139 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03514 Viun-Chr5 44976444 44978167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03514 1 189 MYB Transcription Factor Family AT5G59780 66.146 2.95e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun5g03514 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03514 K09422 - tcc:18590753 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02091 11 36234057 36235433 Viun5g03514 5 44976444 44978167 PCT