Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03479 ATGATTGATCGGAGAAATCTTGGTTTTTTTCTCTGTGTTTTATCAATCTTTCCACTAGTGTGTTTTTCTGCCACCTTTGTTCCAGTAGATAATTACCTTATAGATTGTGGAGCATCTGCAAATACTACAGTAGGTAGGCGCAATTTCACAGCAGATAATTTTTTCAAGGATCTTCTTTCTACACAAGAAGATATTCTTGCGAATTCCTCCTTAAAATCAAGCACTTCTTCTTCCTCCGATGATTCGCCTCTCTATCAAACTGCAAGAATCTTCAATGGACCCTCGAAGTACACCTTTCGAATTAACCAAAAGGGGAGACACTGGATCCGTCTATATTTCTTTCCTTTTACTTACCAAAAGTACAATTTGAGTGCTGCAAATTTCACCGTCGCCACGCAAGACCATGTTCTTTTCAGTAGCTCCAGCTTGCAGAAAGATCCTCAGATGAAGGAGTACTCTGTGAATGTAACATCAGACAACCTCGTTATCACCTTTGCCCCTTCCGGCAATTCCACTGCCTTTGTGAATGCCATTGAAGTTGTTTCTGTCCCCGATGACCTCATTGTTGACGATTTTTCCGCCTTAGTTCCACCGTTAACCTTATCAGGGTTGGTGACACAAACATTTGAGACAGTTTGGAGGGTTAACATGGGTGGTTCAACTGTGACCCCCACGAATGACACCCTTCAAAGAACTTGGATTCCAGATGAAAGGTTCCTTTTGGAACCTAACCTTGCAAAATCTGTTAATAATATTCGTGGTGTCAACTATGAGCAAGGTGGTTCAACAACAGAAAACACTGCTCCCGCTTCTGTTTATGGTACCCTCACAGAGATGAACTCATCCTCTGACCCCCGAAGTAATTTCAACGTGACATGGAAGTTTGATGTGAGTCCTGGATTTCAGTACCTTGTTCGATTTCACTTCTGTGATGTGGTCAGTAAAAGTCTCAATTCACTCTACTTCAATGTTTATATTGACTCCAAGATAGCTGCTCCTGATGTTGATCTGGGTACTTTGGGTAATAATGCTTTGGGCGTTCCATATCATAAGGATGTGGTTACACCGTTGGCTGTAAACAATACACTTCGTGTAAGTATTGGTCCTTCTGATTTGAGTAAGGATTACCCTAATGCAATTTTGAATGGGTTGGAGATCATGAAAATGAACAATTCTATGGGCAGTCTCATCACAGGAACAGTACCTGCAGCTATTGGTTTAGGTTCAAGTTCTAAGAGTATTGGCATGATTGTGGGTGTGGTTGTTGGGGTAGTTGGTGCAGTTGTGTTGGCTGGAGTTTTCTTTGTGTTATGCATGAGGAGAAGAAAGTTGGTTAGGCAAAGACAGTCAAAGACATGGGTTCCTTTATCCATCAATGATGGAACTACTTCTCATACCATGGGAAGTAAATACTCTAATGGCACAACACTAAGTGTTGCTTCAAACCATGAGTACAGAGTGCCTCTTCTTGCAGTTCAGGAGGCTACAAACAACTTTGATGAGAGTTGGGTTATTGGGATAGGTGGATTTGGTAAAGTGTACAAAGGAGAGTTAAGTGATGGCACAAAAGTGGCAGTGAAGAGGGGGAATCCACGGTCCCAGCAGGGGCTTGCAGAGTTCCAAACTGAGATTGTAATGCTGTCTCAGTTCCGGCATCGCCATCTGGTGTCTTTGATTGGTTATTGTGATGAAAAAAATGAAATGATCTTGATATATGAATATATGGAGAAAGGAACTCTCAAGAGTCATTTATATGGCTCGGATCTGCCTAGCTTAAGCTGGAAGGAGAGGCTTGAGATATGCATTGGCTCAGCCAGAGGACTTCATTATCTTCACACTGGCTATGCAAAAGCTGTTATTCACCGTGATGTGAAGTCTGCAAATATCCTTCTTGATGAGAAACTAATGGCTAAAGTTGCTGATTTTGGACTATCAAAGACAGGGCCTGAGATTGACCAGACGCATGTGAGCACAGCTGTGAAAGGTAGTTTTGGGTACCTGGATCCAGAGTATTTCAGGAGGCAACAACTGACAGAAAAATCAGATGTGTATTCATTTGGGGTGGTTCTGTTTGAAGTTCTTTGTGCAAGACCTGTTATAGATCCTACACTTCCCAGGGAAATGGTGAACTTGGCAGAATGGGCAATGAAATGGCAGAAGAAAGGGCAATTGGAGCAGATCATAGATGAAAGACTTGCAGGGAAAATCAGGCCAGATTCTCTTAGGAAGTTTGGAGAAACTGCTGAGAAATGCTTGGCTGATTATGGTGTTGATAGACCTTCAATGGGAGATGTGTTGTGGAATTTGGAGTATGCTCTCCAACTTCAAGAGGCTGTGGTTCAAGGTGATGCTGAAGAAAACAGCACCAATATGATTGGTGAACTTTCTCCACAGGTCAACAATTTCAGCCAGGATGCAAGTGCTTCTACTGCACATTTTGAAGGCACAAGTCTGGATGATCTCTCTGGTGTTTCTATGAGTAGGGTCTTCTCACAATTGGTGAAGTCTGAGGGTAGATAG 2520 0.4238 MIDRRNLGFFLCVLSIFPLVCFSATFVPVDNYLIDCGASANTTVGRRNFTADNFFKDLLSTQEDILANSSLKSSTSSSSDDSPLYQTARIFNGPSKYTFRINQKGRHWIRLYFFPFTYQKYNLSAANFTVATQDHVLFSSSSLQKDPQMKEYSVNVTSDNLVITFAPSGNSTAFVNAIEVVSVPDDLIVDDFSALVPPLTLSGLVTQTFETVWRVNMGGSTVTPTNDTLQRTWIPDERFLLEPNLAKSVNNIRGVNYEQGGSTTENTAPASVYGTLTEMNSSSDPRSNFNVTWKFDVSPGFQYLVRFHFCDVVSKSLNSLYFNVYIDSKIAAPDVDLGTLGNNALGVPYHKDVVTPLAVNNTLRVSIGPSDLSKDYPNAILNGLEIMKMNNSMGSLITGTVPAAIGLGSSSKSIGMIVGVVVGVVGAVVLAGVFFVLCMRRRKLVRQRQSKTWVPLSINDGTTSHTMGSKYSNGTTLSVASNHEYRVPLLAVQEATNNFDESWVIGIGGFGKVYKGELSDGTKVAVKRGNPRSQQGLAEFQTEIVMLSQFRHRHLVSLIGYCDEKNEMILIYEYMEKGTLKSHLYGSDLPSLSWKERLEICIGSARGLHYLHTGYAKAVIHRDVKSANILLDEKLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAMKWQKKGQLEQIIDERLAGKIRPDSLRKFGETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAVVQGDAEENSTNMIGELSPQVNNFSQDASASTAHFEGTSLDDLSGVSMSRVFSQLVKSEGR 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03479 839 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Viun5g03479 839 FunFam Putative receptor-like protein kinase 31 184 - -
Viun5g03479 839 FunFam Receptor-like protein kinase FERONIA 208 391 - -
Viun5g03479 839 SUPERFAMILY Protein kinase-like (PK-like) 475 770 IPR011009 -
Viun5g03479 839 CDD STKc_IRAK 505 770 - -
Viun5g03479 839 Gene3D Transferase(Phosphotransferase) domain 1 575 794 - -
Viun5g03479 839 ProSitePatterns Protein kinases ATP-binding region signature. 505 527 IPR017441 GO:0005524
Viun5g03479 839 ProSiteProfiles Protein kinase domain profile. 499 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03479 839 SMART serkin_6 499 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03479 839 Pfam Malectin-like domain 34 389 IPR024788 -
Viun5g03479 839 Gene3D - 208 391 - -
Viun5g03479 839 Gene3D - 31 184 - -
Viun5g03479 839 Gene3D Phosphorylase Kinase; domain 1 460 574 - -
Viun5g03479 839 FunFam receptor-like protein kinase FERONIA 463 574 - -
Viun5g03479 839 Pfam Protein tyrosine and serine/threonine kinase 504 715 IPR001245 GO:0004672|GO:0006468
Viun5g03479 839 FunFam Receptor-like protein kinase FERONIA 575 790 - -
Viun5g03479 839 PANTHER OS07G0166700 PROTEIN 486 776 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03479 Viun-Chr5 44847984 44851334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03479 10 839 Receptor kinase-like Gene Family AT3G46290 65.036 0.0 1079
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Viun5g03479 Malectin_like 1.9e-38 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03479 - - gmx:100305416 1375.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03479 5 44847984 44851334 Viun11g02058 11 36049791 36053185 PCT