Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03477 ATGTTTGAACAATCTTCCACTGCATCACCCATTCCTTCACCTTCTTCTTCTTCTTATCTCTTCCCTCACCTCACTCAATTCGACACCCTCCCCCAACTCAACAACTCCCACACCAGTTACTGCTACAACAATTATGGTGGCTATAGCAGTAACTGTAGCAGTGGCTATAGCAGTTATGGTGCCTCTCCCACTTCTGTTCCCACCTTTATGCAGAGGAGTGTCAGTAGTAACTCCTTCAACTACACCAACAATGCCACCCACCACCCTCTTTCTGCTTTCTTCGCCGAATTGCTCGACTCTCGTGATGCTCCTGTTAGGAGAGTTTGCAGCACCGGTGATCTCCAGGGGATTAATGGAACTCAACACAATCACCTCTCGGATAGTCCGTTATCAAGCGAAAGCAGCATGATCATAGAAGGTATGAACAGAGCTTGCAGATATAGCCCAGAGGAGAAGAAGGTGAGAATTGAGAGATACAGAAGCAAGAGGAACCAGAGGAATTTCAACAAGAAAATTAAGTATGCTTGCAGGAAAACATTGGCAGACAGCAGGCCACGCATCAGAGGAAGGTTTGCAAGGAATGATGAAATTGACAAGAACAGTTCAATTCAGTGGAGCCAAAGTGGTGGAGATGAAGAGGATGAAGAAGATGAGAATTGGTTCACCATCTTAGATTCCTTAGTTGCAGCAAATTTTGCTCAAGAGTCTCAAGGAAGTTGTTCCTCCTATGGTGTATTCTACTAG 744 0.4516 MFEQSSTASPIPSPSSSSYLFPHLTQFDTLPQLNNSHTSYCYNNYGGYSSNCSSGYSSYGASPTSVPTFMQRSVSSNSFNYTNNATHHPLSAFFAELLDSRDAPVRRVCSTGDLQGINGTQHNHLSDSPLSSESSMIIEGMNRACRYSPEEKKVRIERYRSKRNQRNFNKKIKYACRKTLADSRPRIRGRFARNDEIDKNSSIQWSQSGGDEEDEEDENWFTILDSLVAANFAQESQGSCSSYGVFY 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03477 247 Pfam CCT motif 154 194 IPR010402 GO:0005515
Viun5g03477 247 ProSiteProfiles CCT domain profile. 152 194 IPR010402 GO:0005515
Viun5g03477 247 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 40 222 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03477 Viun-Chr5 44833944 44836353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03477 148 201 C2C2-CO-like Transcription Factor Family AT5G15850 46.296 3.16e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun5g03477 CCT 8.9e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03477 - - gmx:102661609 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03477 5 44833944 44836353 Viun5g03477 5 44833944 44836353 ECH
Viun5g03477 5 44833944 44836353 Viun11g02055 11 36036059 36038691 PCT