Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03470 ATGGAGCAGTCAGAAAAATCGCCGAAGAAAATATCCTCAGTGAGATCATCATTTCCGAGAGATCCACGTGGCTCACTCGAAGTGTTCAACCCAAACACTTCAATTGCTACGAACTCGCGCGTGCGTTCACAGCCGCTTTGGAAACCGTGGACGGAGTCGGAGGAGCCGCGCAATGAAATCACCGCCACGTCGTGGATGGCCATTAATCCGGCACCACAAGCGGACTCGGAATGCGGCGCGGCGGCGCAGCGGGCAGCGGAGTGGGGATTGGTGCTCCGAACCGACACAGAGACCGGCAAGCCGCAGGGCGTGGCGGTGAGGAACTCCGGCGGCGAGGAACCCAACGTTGCCAAACTTGCCGCCGCTGCTGCTTCGTCTTCCAGGAAGAACTCTCAGAACTCCGCCAGAACCTCCGGCGACTCCAACTCCGACGGCGAAATCGGCGTCGTGGGTGGGATTCCGAGAATTTCGGAGGACGTGATGGGGGCTTTGTCGGCTTTCCAACAAACTTTCGTGGTCTCGGATGCTACCAGACCCGATTACCCGATCCTGTATGCGAGTGCCGGGTTCTTTAAAATGACGGGTTATACGTCGAAGGAAGTTATCGGGAGAAACTGTCGATTTTTACAGGGTGCAGATACTGATCCTGTTGATGTGGCAAAGATAAGAGAAGCATTGGAAGCTGGGAAAATTTACTGCGGAAGGCTATTAAATTACAAGAAGGATGGAACACCTTTCTGGAACCTTCTGACGATTTCACCGATTAAGGATGAAGATGGGAAGGTCCTAAAATTTATCGGGATGCTAGTGGAGGTTAGCAAGCACACGGAAGGGTTGAAGGAGAAGACGCTACGTCCCAATGGATTGCCGGAATCCTTGATTCGATACGATGCACGCCAGAAAGAGAAGGCTACAAACTCATTATCTGAGTTGGTGCAGATCATGAAGCGTCCCCGAGCATTGAGTGAATCCGCAAGCCGACCCTCCATCAGAAAATCAGGATTTGCTGAGGAAGAAAAACAGTCACTCCATGAAGAAGAAGAAGAAGAGGAGGAGGAAGAAGAGAAAGAGAAAGCAGAAAAAATATTGAGAAGAAGATCTGAGAGTGGAGTTTCATTTGGACGCAAAGCCGAAGGAGGAAATAGAATTTCAATGCAACGAATCAGTGAAGTAGCTGAAAATAAACTGAAAAAATCTCAGCGCCGTTCTTTCATGGGGTTCAGGCGGAAAAGTCAGTCCAACGACGAAAGCGTGGAAAATGAAGTTATGGAGGATGTGAGCTCTGACAGTGAGGATGGTGAGAGGCCTGATAGTTTTGACGTAGATGAGAAAGAAAAGCAGAGGGAAAAGAGAAAAGGTCTTGATCTTGCTACCACGCTTGAACGTATTGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCAGACAATCCAATAATCTTTGCATCGGATAGCTTCTTAGAGCTTACAGAATATAGCCGTGAAGAAATCTTGGGAAGGAACTGCAGGTTTCTACAAGGACCTGAAACTGATCCGGCAACTGTGAGAAAAATTAGAGAGGCAATTGACAACCAAACAGAAGTTACTGTGCAACTGATTAATTATACAAAGAGTGGAAAGAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGATCAGAAGGGAGAAGTGCAGTACTTTATTGGTGTTCAACTAGATGGTAGTCAACATGTAGAGCCTCTTCAGAACTGCATCGCGGAAGATACTGCAAAGGAGGGAGAACAAATGGTCAAACAAACTGCAGAAAATGTTGATGTGGCAGTGAGAGATCTTCCGGATGCTAATACGAAACCAGATGATTTATGGACAAATCATTCAAAAGCAGTTTACCCCAAACCTCATAGGAAGGATAACCCTGCATGGAAATCTATCCAGAAGGTCCTACAAAGTGGAGAACAGATAGGCTTAAAGCACTTTAGGCCGATTAAACCTTTAGGATCAGGAGATACTGGCAGTGTGCATCTGGTGGAGCTACGTGGAACAGGTCAATATTTTGCCATGAAGGCTATGGATAAGAGTGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCGCAGAGAGAGAAATTCTTGACAAGCTGGACCACCCTTTTCTACCTGCATTATATGCTTCCTTTCAGACCAAAACACACGTTTGTTTGATAACTGATTATTGTCCTGGAGGAGAATTATTCATGGTTCTTGACCAGCAACCAACTAAGGTTCTAAAGGAAGACGCTGTAAGATTTTATGCAGCTGAGGTAGTGATTGCATTGGAGTATCTTCACTGCCAAGGGATAATATATCGAGATTTGAAGCCTGAAAATGTGTTAATCCAGAGCAATGGGCATGTGTCCCTAACAGACTTTGATTTGTCATGTTTAACTTCTAGTAAGCCACAGCTTATAATTCCAGCTTCCAATTCAAAAAAGAAGAAGAAGAAGAAGAAACACAGAAGTCAGGAGGTTCCAGTGTTTATGGCTGAACCAATGAGAGCATCAAATTCTTTTGTTGGCACAGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCTGGTCATACTAGTGCTGTTGATTGGTGGGCTCTAGGTATTCTTATATATGAAATGCTCTATGGATATACTCCATTCAGGGGAAAGACAAGACAAAAAACATTTGCAAATATTCTTCACAAGGATCTTAAATTTCCCAAAAGTAAACCGGTAAGTCTCCAGGGAAAGCAGCTAATTTATTGGTTATTGCAGAGAGATCCCAAAGACAGATTGGGGTCACGTGAAGGAGCAAATGAAATTAAACGTCATTCTTTCTTCAAAGGTGTAAATTGGGCACTGGTTCGTTGCATGAAACCTCCTGAACTTGATGCTCCTCTCTTATCGAAAACTGAAGAAGAAAAAGAAGACAAAGATATGGAGGATTTACAGACAAATGTTTTCTGA 2958 0.449 MEQSEKSPKKISSVRSSFPRDPRGSLEVFNPNTSIATNSRVRSQPLWKPWTESEEPRNEITATSWMAINPAPQADSECGAAAQRAAEWGLVLRTDTETGKPQGVAVRNSGGEEPNVAKLAAAAASSSRKNSQNSARTSGDSNSDGEIGVVGGIPRISEDVMGALSAFQQTFVVSDATRPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPVDVAKIREALEAGKIYCGRLLNYKKDGTPFWNLLTISPIKDEDGKVLKFIGMLVEVSKHTEGLKEKTLRPNGLPESLIRYDARQKEKATNSLSELVQIMKRPRALSESASRPSIRKSGFAEEEKQSLHEEEEEEEEEEEKEKAEKILRRRSESGVSFGRKAEGGNRISMQRISEVAENKLKKSQRRSFMGFRRKSQSNDESVENEVMEDVSSDSEDGERPDSFDVDEKEKQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLQNCIAEDTAKEGEQMVKQTAENVDVAVRDLPDANTKPDDLWTNHSKAVYPKPHRKDNPAWKSIQKVLQSGEQIGLKHFRPIKPLGSGDTGSVHLVELRGTGQYFAMKAMDKSVMLNRNKVHRACAEREILDKLDHPFLPALYASFQTKTHVCLITDYCPGGELFMVLDQQPTKVLKEDAVRFYAAEVVIALEYLHCQGIIYRDLKPENVLIQSNGHVSLTDFDLSCLTSSKPQLIIPASNSKKKKKKKKHRSQEVPVFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILIYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSLQGKQLIYWLLQRDPKDRLGSREGANEIKRHSFFKGVNWALVRCMKPPELDAPLLSKTEEEKEDKDMEDLQTNVF 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03470 985 SMART pas_2 158 227 IPR000014 -
Viun5g03470 985 SMART pas_2 454 523 IPR000014 -
Viun5g03470 985 SUPERFAMILY PYP-like sensor domain (PAS domain) 177 269 IPR035965 -
Viun5g03470 985 SMART serkin_6 653 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03470 985 ProSiteProfiles PAS repeat profile. 452 525 IPR000014 -
Viun5g03470 985 MobiDBLite consensus disorder prediction 40 59 - -
Viun5g03470 985 MobiDBLite consensus disorder prediction 402 453 - -
Viun5g03470 985 CDD PAS 183 272 IPR000014 -
Viun5g03470 985 PANTHER FLIPPASE KINASE 1-RELATED 353 966 - -
Viun5g03470 985 ProSiteProfiles Protein kinase domain profile. 653 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03470 985 Gene3D Transferase(Phosphotransferase) domain 1 737 958 - -
Viun5g03470 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 774 786 IPR008271 GO:0004672|GO:0006468
Viun5g03470 985 MobiDBLite consensus disorder prediction 432 453 - -
Viun5g03470 985 Gene3D PAS domain 170 327 - -
Viun5g03470 985 FunFam LOV domain-containing protein 652 736 - -
Viun5g03470 985 MobiDBLite consensus disorder prediction 1 31 - -
Viun5g03470 985 ProSiteProfiles PAS repeat profile. 156 229 IPR000014 -
Viun5g03470 985 NCBIfam PAS domain S-box protein 477 567 IPR000014 -
Viun5g03470 985 NCBIfam PAS domain S-box protein 183 276 IPR000014 -
Viun5g03470 985 MobiDBLite consensus disorder prediction 963 985 - -
Viun5g03470 985 Gene3D PAS domain 440 605 - -
Viun5g03470 985 Gene3D Phosphorylase Kinase; domain 1 652 736 - -
Viun5g03470 985 MobiDBLite consensus disorder prediction 357 372 - -
Viun5g03470 985 CDD STKc_phototropin_like 651 963 - -
Viun5g03470 985 SUPERFAMILY Protein kinase-like (PK-like) 632 964 IPR011009 -
Viun5g03470 985 MobiDBLite consensus disorder prediction 121 148 - -
Viun5g03470 985 MobiDBLite consensus disorder prediction 319 386 - -
Viun5g03470 985 MobiDBLite consensus disorder prediction 342 356 - -
Viun5g03470 985 FunFam Putative LOV domain-containing protein 737 956 - -
Viun5g03470 985 CDD PAS 467 567 IPR000014 -
Viun5g03470 985 ProSiteProfiles PAC domain profile. 230 284 IPR000700 -
Viun5g03470 985 SUPERFAMILY PYP-like sensor domain (PAS domain) 468 567 IPR035965 -
Viun5g03470 985 ProSitePatterns Protein kinases ATP-binding region signature. 659 682 IPR017441 GO:0005524
Viun5g03470 985 MobiDBLite consensus disorder prediction 124 144 - -
Viun5g03470 985 FunFam LOV domain-containing protein 441 605 - -
Viun5g03470 985 Coils Coil 333 369 - -
Viun5g03470 985 Pfam Protein kinase domain 655 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03470 985 SMART pac_2 233 275 IPR001610 -
Viun5g03470 985 SMART pac_2 529 571 IPR001610 -
Viun5g03470 985 ProSiteProfiles PAC domain profile. 526 580 IPR000700 -
Viun5g03470 985 FunFam Putative LOV domain-containing protein 170 326 - -
Viun5g03470 985 Pfam PAS domain 177 273 IPR000014 -
Viun5g03470 985 Pfam PAS domain 475 567 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03470 Viun-Chr5 44743148 44755389 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03470 1 985 AGC Kinase Gene Family AT3G45780 68.544 0.0 1338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Viun5g03470 Pkinase 1.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03470 K20715 - gmx:100817565 1709.5