Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03467 ATGGGTTGCTTTCGTTGCGCAGGCAAACCAAGCAAAAAATCCAACAACGTTAATAGAACGCAGAAGCACATTGCTGCCGTTGTCAAAATTAATTTGAAAGTGAATGGTAAAAGTGAAGATAATCATCGTAAGCCTGATCAGCTATCTCTGGACGTGAAGAATTTGAATCTACAAGAGGTTTCTGATGAGGTAAACGTTAGAAGTTACCGAGCACAAACATTTACTTTTGACGAGCTTGCAGCTGCAACAAGGAAATTTAGGTCAGATTGCTTTCTGGGCGAAGGAGGGTTTGGCAAGGTTTACAAGGGGTGCATAGAGAAAATAAATCAGGTTGTGGCAGTAAAGCAACTAGACCCTTACGGGCATCAAGGAATTAGGGAATTTGTTGTTGAAGTATTGACTTTGAGTTTGGCAGATCACCCTAATTTGGTAAAGTTAATTGGGTTTTGTGCTGAGGGAGAGCAGAGGCTATTGGTTTATGAGTACATGCCATTGGGATCTTTGGAGAACCGTTTGCACGATCTTCCACGTAGCAGAAAAGCACTTGATTGGAACGCGAGAATAAAAATTGCAGCTGGTGCAGCTAGAGGGTTAGAGTATTTGCATGATAAAATGAAGCCTCCTGTCATATACCGTGACTTGAAGTGCTCAAATATTTTATTAGGTGAGGATTATCATCCCAAGTTATCAGATTTTGGGTTGGCAAAAGTAGGACCAAGTGGTGATAACACCCACGTTTCAACAAGAGTTATGGGAACATATGGGTACTGTGCACCAGATTATGCAATGACGGGTCAATTGACGTTCAAGTCTGACATTTATAGCTTCGGAGTTGTTCTTTTGGAGATCATCACAGGCAGAAAGGCCATTGACAACACGAAACCTGCTAAAGAACAAAATCTAGTTGCATGGGCAAGACCTTTGTTCAAAGACAGAAAAAGATTCTGTGAGATGGTTGACCCATTGCTTCAAGGTCAGTATCCAGTAAGAGGTTTGTACCAAGTTCTTGCTATTGCTGCCATGTGTGTTCAAGAACAACCTAGTATGCGACCTGTCATAGCTGATGTGGTTACAGCTCTAAATTACCTTGAATGCCAGAAGTACGATCCCCAATTTCATCTAATTCAAAGCTCTAGAACTGGTTACTATTCTTCAAGACCAACCCACCAAAATCTTAGATCAACTCTTAGCTATGGCTCTGAGCCAAGACCGAGCACAGGTGGTCATAAACTACTTGTTAGTGATAGTGGTTCGGAGTCAGAAATCTATGTAAAAGGTCTATCTTCTCCAAGAACACGAAGTGACGGTCATCAACATTTTTATACCAATAATGATTCCGAGACTGACAGTTCTGCAGATTAG 1362 0.4141 MGCFRCAGKPSKKSNNVNRTQKHIAAVVKINLKVNGKSEDNHRKPDQLSLDVKNLNLQEVSDEVNVRSYRAQTFTFDELAAATRKFRSDCFLGEGGFGKVYKGCIEKINQVVAVKQLDPYGHQGIREFVVEVLTLSLADHPNLVKLIGFCAEGEQRLLVYEYMPLGSLENRLHDLPRSRKALDWNARIKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEDYHPKLSDFGLAKVGPSGDNTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLEIITGRKAIDNTKPAKEQNLVAWARPLFKDRKRFCEMVDPLLQGQYPVRGLYQVLAIAAMCVQEQPSMRPVIADVVTALNYLECQKYDPQFHLIQSSRTGYYSSRPTHQNLRSTLSYGSEPRPSTGGHKLLVSDSGSESEIYVKGLSSPRTRSDGHQHFYTNNDSETDSSAD 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03467 453 ProSiteProfiles Protein kinase domain profile. 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03467 453 FunFam Serine/threonine-protein kinase PBS1 163 378 - -
Viun5g03467 453 MobiDBLite consensus disorder prediction 421 453 - -
Viun5g03467 453 MobiDBLite consensus disorder prediction 397 453 - -
Viun5g03467 453 SMART serkin_6 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03467 453 PANTHER OS07G0668900 PROTEIN 3 371 - -
Viun5g03467 453 SUPERFAMILY Protein kinase-like (PK-like) 72 393 IPR011009 -
Viun5g03467 453 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Viun5g03467 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Viun5g03467 453 Gene3D Transferase(Phosphotransferase) domain 1 163 379 - -
Viun5g03467 453 Pfam Protein tyrosine and serine/threonine kinase 91 359 IPR001245 GO:0004672|GO:0006468
Viun5g03467 453 Gene3D Phosphorylase Kinase; domain 1 56 162 - -
Viun5g03467 453 CDD STKc_IRAK 92 361 - -
Viun5g03467 453 FunFam probable serine/threonine-protein kinase RLCKVII 58 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03467 Viun-Chr5 44725271 44728729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03467 1 363 Glycoside Hydrolase AT3G07070 55.435 2.31e-141 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Viun5g03467 PK_Tyr_Ser-Thr 7.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03467 - - gmx:100794680 693.73