Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03453 ATGGAGCAGTTCATCGATAACTTGCCGCCGATGGATCTGATGCGATCCGAGAAGATGACCTTTGTTCAACTCATCATTCCGGTGGAATCCGCACACCGCGCCATCTCCTATTTAGGCGAACTCGGTCTTCTCCAATTCCGCGACTTAAATGCTGATAAAAGTCCCTTCCAGAGAACATTTGTTAATCAGGTAAAACGATGTGCAGAAATGTCAAGAAAACTAAGATTCTTCAAGGATCAAATCAGTAAAGCTGGCCTATTGTCTTCTTCTCGTACTGTATTGCAACCAGATATTGACTTGGAGGATTTGGAGATACAACTTGCTGAACATGAACATGAGCTGATTGAAATGAACTCTAATAGTGACAAACTCCGGCAATCATATAATGAACTCTTGGAATTCAAGATTGTATTACAAAAGGCATGTGGCTTTCTTGTTTCAAGTCATAACCTTGCACTTTCAGATGAAAGAGAACTACAAGAGAATGTATTTTCAAATGATGCCTATGTTGAGACAGCATCTTTGCTTGAACAGGAAATGAGACCTCAGTCATCAAATTCGACTGGTTTAAGATTTATCAGTGGGATAATATGTAGATCCAAGGTTCTTATGTTTGAAAGAATGTTGTTTCGTGCTACAAGAGGCAATATGCTATTCAACCAGGAACCAGCTGATGAACAAATCATGGATCCTGTTTCAACTGAGATGATTGAAAAAACAGTGTTCGTCGTGTTTTTCTCTGGGGAACAGGCAAGAACAAAGATTCTGAAAATTTGTGAGGCATTCGGTGCAAATTGTTATCCTGTTCCCGAAGATATTAGCAAGCAGAGGCAAATAACTAGAGAGGTTTCATCACGTCTTACAGACTTAGAGACAACTTTGGAAGCTGGGATTAGGCACCGGAACAAGGCTCTAGCTTCTGTTGCAGACCATCTAGGAAAATGGATGAGCATGGTAAGAAGAGAGAAGGCTGTGTACGATACACTGAACATGTTAAACTTCGACGTTACAAAAAAATGTCTTGTGGGAGAGGGCTGGTGCCCTCTGCTTGCAAAAACACAGATGCAGGAGGCACTGCAACGTGCAACTTTTGATAGCAATTCTCAAGTTGGCATAATCTTCCATCCACTAGAGGCAGTGGAATCACCACCTACATACTTTCGGACCAACACTTTCACAAATCCATATCAAGAAATTGTTGATGCATACGGTGTTGCAAGATACCAGGAGGCGAATCCTGCAGTTTACACAACTATTATATTCCCTTTCCTATTTGCTTTGATGTTTGGGGACTGGGGTCATGGAATTTGCCTGTTGCTAGGAGCATTGGTTCTTATAGCGCGTGAAAACAAGCTCAGCACACAGAAACTTGGAAGCTTTATGGAGATGCTGTTTGGTGGGCGCTATGTGCTTCTGCTAATGGCACTATTTTCAATCTATTGTGGCTTAATCTACAATGAATTCTTCTCTGTTCCTTTCCACATATTTGGTGCATCTGCATACAAATGCCGTGATAGTTCTTGCAGGGATGCACATACTATTGGCTTAGTCAAATACCAAGACCCATACCCATTTGGTGTGGATCCCAGCTGGCGTGGAAGTCGTTCAGAATTGCCTTTCCTGAATTCTTTGAAGATGAAGATGTCCATTCTGTTTGGTGTGGCACATATGAATTTAGGAATTATATTAAGTTATTTTAATGCACGGTTCTTTGGAAGCTCATTGGATATAAGGTACCAGTTTGTGCCACAGATGATTTTCCTTAACTGTCTATTTGGGTATCTTTCCCTTCTCATTGTTATTAAGTGGTGTACTGGGTCTCAAGCGGACCTTTATCATGTTATGATATACATGTTTTTAAGCCCCACGGACAATCTTGGCGAGAATCAGTTGTTCTGGGGCCAAAGACCACTTCAAATTGTGTTATTGCTTTTGGCTGTAATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATATTGAAGAAGCTTCATACTGAGAGATTTCAAGGTCGTAGTTATGGCTTACTGAACAGTTCTGAGGAGGATCTTGAGGCTGAACCTGATTCTGCCAGACAACATCATCATGAAGAATTCAATTTCAGTGAAGTCTTTGTTCACCAAATGATCCACGCCATTGAATTTGTTCTAGGTTCTGTTTCTAATACAGCATCATATCTTCGTCTTTGGGCATTAAGTTTGGCTCACTCTGAACTTTCTACTGTTTTCTATGAGAAAGTCCTGCTTCTTGCTTGGGGATATGACAATCTTATCATTCGGTTGGTGGGGCTCACCGTTTTTTCCTTTGCAACTGCCTTTATACTACTAATGATGGAGAGTCTTAGTGCTTTTCTTCATGCGTTGCGGCTTCACTGGGTAGAATTTCAAAATAAGTTCTACCATGGCGATGGCTATAAGTTCAGACCTTTTTCATTTGCTTCCTTAACAGAGGAAGATGATTGA 2463 0.4093 MEQFIDNLPPMDLMRSEKMTFVQLIIPVESAHRAISYLGELGLLQFRDLNADKSPFQRTFVNQVKRCAEMSRKLRFFKDQISKAGLLSSSRTVLQPDIDLEDLEIQLAEHEHELIEMNSNSDKLRQSYNELLEFKIVLQKACGFLVSSHNLALSDERELQENVFSNDAYVETASLLEQEMRPQSSNSTGLRFISGIICRSKVLMFERMLFRATRGNMLFNQEPADEQIMDPVSTEMIEKTVFVVFFSGEQARTKILKICEAFGANCYPVPEDISKQRQITREVSSRLTDLETTLEAGIRHRNKALASVADHLGKWMSMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPLLAKTQMQEALQRATFDSNSQVGIIFHPLEAVESPPTYFRTNTFTNPYQEIVDAYGVARYQEANPAVYTTIIFPFLFALMFGDWGHGICLLLGALVLIARENKLSTQKLGSFMEMLFGGRYVLLLMALFSIYCGLIYNEFFSVPFHIFGASAYKCRDSSCRDAHTIGLVKYQDPYPFGVDPSWRGSRSELPFLNSLKMKMSILFGVAHMNLGIILSYFNARFFGSSLDIRYQFVPQMIFLNCLFGYLSLLIVIKWCTGSQADLYHVMIYMFLSPTDNLGENQLFWGQRPLQIVLLLLAVIAVPWMLFPKPFILKKLHTERFQGRSYGLLNSSEEDLEAEPDSARQHHHEEFNFSEVFVHQMIHAIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLIIRLVGLTVFSFATAFILLMMESLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFASLTEEDD 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03453 820 PANTHER VACUOLAR PROTON ATPASES 13 819 IPR002490 GO:0033179|GO:0046961|GO:1902600
Viun5g03453 820 PIRSF ATP6V0A1 9 820 IPR026028 GO:0000220|GO:0046961
Viun5g03453 820 Coils Coil 100 127 - -
Viun5g03453 820 Pfam V-type ATPase 116kDa subunit family 37 812 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03453 Viun-Chr5 44578007 44588957 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03453 1 813 Primary Pumps ATPases(2) AT2G28520 80.736 0.0 1368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03453 K02154 - gmx:100776037 1560.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03453 5 44578007 44588957 Viun5g03453 5 44578007 44588957 ECH
Viun5g03453 5 44578007 44588957 Viun11g02021 11 35749233 35758743 PCT