Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03443 ATGGAGAGTGACGCAAACACCCTCTCTTCCTCTCCCACATTCTCTCACTCCTCCAATACCCTTTCTTCTTCTTCCCCTCCCCAACTTGTCATGACCCCTTGTGCTGCATGCAAAATCCTTAGGCGAAGATGTGCTGAGAAATGTGTGTTGGCACCTTATTTCCCTCCCACCGAACCCGCCAAGTTCACCACTGCTCACAGAGTCTTCGGTGCCAGCAATATAATCAAGTTCTTACAGGAACTTCCGGAGTGTCAGAGAGCTGATGCAGTGGCGAGCATGGTTTACGAGGCTGGTGCAAGAATAAGAGACCCTGTATATGGAAGTGCAGGTGCAATTTGCCAGCTCCAAAAGCAAGTGAATGAACTTCAAGCACAGTTAGCAAAGGCACAAGCTGAGGTTGTAAACATGCAATTCCAACAAGCCAATCTCGTGGCTCTAATTTGCATGGAAATGTCACAGACTCCACAGGAATCACCCCAACAATCCGTCGACAATTTCATCACAAGTCCTTCCCACAGCAGTGGCTATCAGAACAATCTCAGTTTCTTTGAGGATAACACCAACCTAAACTCTCTATGGGAGCCTCTTTGGACATGA 597 0.4774 MESDANTLSSSPTFSHSSNTLSSSSPPQLVMTPCAACKILRRRCAEKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPECQRADAVASMVYEAGARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQFQQANLVALICMEMSQTPQESPQQSVDNFITSPSHSSGYQNNLSFFEDNTNLNSLWEPLWT 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03443 198 ProSiteProfiles LOB domain profile. 32 133 IPR004883 -
Viun5g03443 198 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 32 162 - -
Viun5g03443 198 Pfam Lateral organ boundaries (LOB) domain 33 130 IPR004883 -
Viun5g03443 198 MobiDBLite consensus disorder prediction 1 26 - -
Viun5g03443 198 Coils Coil 112 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03443 Viun-Chr5 44510623 44511963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03443 1 198 AS2 family AT1G07900 60.697 3.28e-78 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun5g03443 LOB 5.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03443 - - gmx:100819336 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03443 5 44510623 44511963 Viun5g03443 5 44510623 44511963 ECH
Viun5g03443 5 44510623 44511963 Viun11g02005 11 35657845 35659837 PCT