Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun5g03432 | ATGGATTTGGTAGCTAGTTGCAAGGAAAAATTGCAATATTTTCGTTTAAAAGAGCTCAAAGATGTGCTCACTCAATTGGGACTGTCAAAACAGGGAAAGAAGCAGGATCTTGTTGATAGGATATTGTCTATTCTTTCAGAGGACCAAGTATCTAAATTGTGGATCAAGAAGAATGCAGTTGGAAAACAACGGGTGGCCAAGTTAGTGGAGGACACATATAGAAAATTGCAGGTTTCTGGGGCCATTGACTTGTCATCGAAGGGACAGGGCTCTGATAGCAGTAATGTGAAAATTAAAAGTGAAATGGAGGATTCCTTTCTATCAGATACTAAGATTCGCTGTCTTTGTGGAAATGTATTGGATACGGACCCTTTGGTCAAGTGTGCAGATACAAGGTGTGATGTGTCGCAGCATATAAACTGTGTTGTTATTCCAGAGAAACCTACGGATGGAACCCCACATGTTCCTGATAAATTCTACTGTGAAATATGTCGAGTTGATCGTGCAGACCCGTTTTGTGTTTCAGTCACACACCTTTTGTTTCCGGTGAAGTTGACAACAACCAATATTCCCACTGATGGAACCAGCCCAGTACAAAGTGTGGAAAGAACGTTTCAACTCACGAAAGCAAACAAGGAGTTGGTATCGAAACCAGAGTATGATATTCAGGCTTGGTGTATGCTTTTGAATGACAAGGTTTCATTCAGGATGCAATGGCCACAACATACAGATTTAAAAGTCAACGGTCTTCCTGTTCGTGCAATTAACAGACCCGGTTCACAGATGCTTGGGGCTAATGGTCGTGACTCTGGTTCAGTTATCACACCATATTCGAAGGATGGAATTAATAGGATTTCCTTGACGGTGGTGGATGCTCGCATATTCTGTTTAGGGGTTCGAATTATTAAAAGGCTCACCATGCCAGAGATTCTAAGCATGATTCCAGAGGAGCCTGATGGTGAGCGTTTTGAAGATGCTCTTGCACGTGTTTGTTGTTGTGTTGGGGGTGGAAATGCTAATGATAATGCTGATAGTGATAGTGATTTGGAAGTGGTTTCAGATACTTTTAGCATCAATCTTCGTTGCCCAATGAGTGGTTCTAGAATGAAGATTGCAGGAAGATTCAAACCTTGTGTTCACATGGGCTGTTTCGATCTTGAAGTTTTTGTTGAAATGAATGAACGATCAAGGAAGTGGCAGTGTCCCATATGCCTTAAAAATTATGCTCTGGAGAATATCATCATTGACCCTTACTTCAATCGCATCACTACTCTGATGAAAAATTGTGGAGAAGAGATTACAGAGATCGAGGTGAAGCCTGATGGTTTTTGGCGTGTCAAGGTTAAGAATGAAAGTGAACGACGGGAGTTGGGAACTCTTGCTCATTGGCACCGTCCTGATGGATCTCTCTTTGTCTCTACTGATGAAATAAAGAAAATGGAAAATTTAAAGCTCAAACAGGAAGGTGTTTCAGATGGTCCTATTGGTTTAAAACTTAGGAAGAATAGTAACGGTGTTTGGGAAGTCAGCAAACCTGAGAATACAAACACCTCTTCTGGTAATAATAGATTGAATGAGGATCTTGAAAATATTGAACATGTTATTATTCCAATGAGCAGCAGTGACACTGGAAGTGGCCGGGATGAAGATGATCCAAGCGTAAATCAGGGTGGTGGTGGACATATTGATTATTCTACTACCAATGGTATTGAGATTGATTCTGTGTTTAACAGTAATATTGATTCCGCATATGGATATTCTGTTCATAATGCTTCTGCTCCAATTGGTGATGCAGAAGTTATTGTTATTAGTGATTCAGAAGAAGACAACGATGTATTGATGTCTCCGACTCCTATAACTGGGTACAACAATAATCAAACTAGTGCTGCAGTTGATGTTTACTCGGTGCTAGAGCCTGGAATTATTGATCCATATACGGAAGATCACAATCCTGGTGGAAATGCAGGTTTGGGAGTTTTTAATAGTCATCCCAGTGAAGATGATTTTGGGATGTCCTCCCTCTGGCCATTGCAATCTGGAACTCCAGCAGTCCCAGGATTCCAATTATTTAGTTCTGAAGTGGAGGATGTGTCAGATACATTGGTTGGTTTGCAGAGTGGTAACATCAATTGCTCATCGTCCCTGAATGGTTATATGTTGGCCCCGGATACTGCTTTGGGATCTAGCACTCTTACCCCAGATTCCTCGGTAGTTCGACCTGAGGATGATTTAAATGGTGGCTTGGTTGACAATCCACTGGCATTTCCCAGAGAAGATCCCTCCCTTCAGATTTTTCTACCTACAAAACCAGCAGAATCATCTATGCAGCATGAATTGAGTGATCATGCAGACGTATCAAATGGTGTCTTTACGGAGGATTGGATCACTCTTAGTCTTGGAGGTGGTGCTAGTGGCAGTAATGGTGACACTTCCACTGCAAGTGGATTGAATTCCAGACCGCAAATTGCATCTGGAGAAGGTGCCACAAATTCCTTGACAGATACCGCTCCTTTACTCCTTGGTATGAATGATGTTAGATCTGACAAGGCAATTCGGAAAAGATCTGATTCAGATAGCCCTTTCTCTTTTCCTCGTCAAAAACGTTCAGAAATGGAAGATAATGTGGTCTGA | 2631 | 0.4162 | MDLVASCKEKLQYFRLKELKDVLTQLGLSKQGKKQDLVDRILSILSEDQVSKLWIKKNAVGKQRVAKLVEDTYRKLQVSGAIDLSSKGQGSDSSNVKIKSEMEDSFLSDTKIRCLCGNVLDTDPLVKCADTRCDVSQHINCVVIPEKPTDGTPHVPDKFYCEICRVDRADPFCVSVTHLLFPVKLTTTNIPTDGTSPVQSVERTFQLTKANKELVSKPEYDIQAWCMLLNDKVSFRMQWPQHTDLKVNGLPVRAINRPGSQMLGANGRDSGSVITPYSKDGINRISLTVVDARIFCLGVRIIKRLTMPEILSMIPEEPDGERFEDALARVCCCVGGGNANDNADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCVHMGCFDLEVFVEMNERSRKWQCPICLKNYALENIIIDPYFNRITTLMKNCGEEITEIEVKPDGFWRVKVKNESERRELGTLAHWHRPDGSLFVSTDEIKKMENLKLKQEGVSDGPIGLKLRKNSNGVWEVSKPENTNTSSGNNRLNEDLENIEHVIIPMSSSDTGSGRDEDDPSVNQGGGGHIDYSTTNGIEIDSVFNSNIDSAYGYSVHNASAPIGDAEVIVISDSEEDNDVLMSPTPITGYNNNQTSAAVDVYSVLEPGIIDPYTEDHNPGGNAGLGVFNSHPSEDDFGMSSLWPLQSGTPAVPGFQLFSSEVEDVSDTLVGLQSGNINCSSSLNGYMLAPDTALGSSTLTPDSSVVRPEDDLNGGLVDNPLAFPREDPSLQIFLPTKPAESSMQHELSDHADVSNGVFTEDWITLSLGGGASGSNGDTSTASGLNSRPQIASGEGATNSLTDTAPLLLGMNDVRSDKAIRKRSDSDSPFSFPRQKRSEMEDNVV | 876 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun5g03432 | 876 | SUPERFAMILY | SAP domain | 1 | 64 | IPR036361 | - | |
| Viun5g03432 | 876 | MobiDBLite | consensus disorder prediction | 803 | 835 | - | - | |
| Viun5g03432 | 876 | FunFam | E3 SUMO-protein ligase SIZ1 | 1 | 66 | - | - | |
| Viun5g03432 | 876 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 337 | 446 | IPR013083 | - | |
| Viun5g03432 | 876 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 102 | 170 | IPR013083 | - | |
| Viun5g03432 | 876 | ProSitePatterns | Zinc finger PHD-type signature. | 114 | 164 | IPR019786 | - | |
| Viun5g03432 | 876 | Pfam | MIZ/SP-RING zinc finger | 358 | 406 | IPR004181 | GO:0008270 | |
| Viun5g03432 | 876 | Gene3D | SAP domain | 1 | 64 | IPR036361 | - | |
| Viun5g03432 | 876 | PANTHER | ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN | 9 | 644 | - | - | |
| Viun5g03432 | 876 | SMART | PHD_3 | 113 | 165 | IPR001965 | - | |
| Viun5g03432 | 876 | MobiDBLite | consensus disorder prediction | 849 | 876 | - | - | |
| Viun5g03432 | 876 | Pfam | SAP domain | 14 | 42 | IPR003034 | - | |
| Viun5g03432 | 876 | CDD | PHD_Bye1p_SIZ1_like | 113 | 164 | - | - | |
| Viun5g03432 | 876 | ProSiteProfiles | SAP motif profile. | 11 | 45 | IPR003034 | - | |
| Viun5g03432 | 876 | SMART | sap_9 | 11 | 45 | IPR003034 | - | |
| Viun5g03432 | 876 | CDD | SP-RING_Siz-like | 359 | 408 | IPR031141 | - | |
| Viun5g03432 | 876 | SUPERFAMILY | FYVE/PHD zinc finger | 108 | 168 | IPR011011 | - | |
| Viun5g03432 | 876 | MobiDBLite | consensus disorder prediction | 538 | 560 | - | - | |
| Viun5g03432 | 876 | ProSiteProfiles | Zinc finger SP-RING-type profile. | 345 | 428 | IPR004181 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun5g03432 | Viun-Chr5 | 44429082 | 44448435 | Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun5g03432 | - | K22403 | gmx:100811996 | 1473.37 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Viun5g03432 | 5 | 44429082 | 44448435 | Viun5g03432 | 5 | 44429082 | 44448435 | ECH | |
| Viun5g03432 | 5 | 44429082 | 44448435 | Viun11g01991 | 11 | 35557404 | 35568226 | PCT |