Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03430 ATGGAAATTGATCTGAACTATGCAGTGACTGAGCCTGAGAAGACCGCGTCTTGCAATGGCGACTGTGACAAAGGTGCTGCTTGCGTTTGCTCTCTGTCCTCTCCTACTTGTTCATCTTCTGGTTCCTCCTCCGCACGTGTGTCCTCCTCTTATCTTGAGCTCTGGCACGCTTGTGCTGGCCCCCTCACTTCCCTCCCAAAGAAAGGGAATGTGGTGGTGTATTTCCCACAAGGGCACTTAGAACAAGCCTCATCTTTCTCTCCCTTTTCATCAATGGACATGCCAACCTATGATCTTCAGCCACAGATCTTCTGTAGAGTTGTCAATATTCAGTTACTTGCCAATAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCCCAGGCTGAGTTGGCAGGGATGTATTTGGAGGGAAAAGAGCTTGAGGAATTGGGAGCAGATGAAGAGGGAAATGAAACAACACCTACAAAATCAACTCCTCATATGTTCTGCAAAACACTCACAGCCTCAGACACCAGCACTCATGGGGGGTTTTCTGTCCCTCGCAGAGCTGCTGAAGACTGTTTTCCTCCATTGGATTATAAGCAGCAAAGGCCCTCTCAGGAGCTTGTTGCCAAGGACCTGCATAATGTGGAGTGGAAATTTCGACATATTTACAGAGGTCAGCCAAGGCGGCATCTTCTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGAGATGCAGTTCTCTTTCTGAGGGGTGAAAATGGAGAACTGAGATTGGGAATCCGAAGAGCTGCTCGACCAAGAAATGGTCTTCCTGAATCAATTGTTGGTAGCCAGAATTATTATCCCAATTTCCTTTCTTCTGTGGCCAATGCTATATCCGCCAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCGGATTTTGTTGTGCCCTACCAAAAGTATGTCAAAAGCATAAAGAATCCAGTAACCATTGGGACAAGATTCAAAATGAAATTTGAAATGGATGAATCTCCGGAGAGAAGGTGTACTAGTGGTATAGTGACTGGAATGAGTGATTTGGATCCCTATAAATGGCCTAAGTCAAGATGGAGGTGCTTGATGGTGAGATGGGATGAAGATATTGAGATTAATCATCAAGATAGAGTATCTCCTTGGGAGATTGATCCTTCTGCATCTCTCCCTCCCTTGAGCATTCAATCCTCCAGAAGGCTGAAGAAACTGAGGCCAGGTCTGCAGGGTGCTTCACCCAGTCACCTCATCACAGGAGGCAGTGGGTTTATGGACTCTGAGGAGTCTGTAAGATCATCCAAGGTCTTGCAAGGTCAAGAAAAGTCAGGTTTTATGTCACTGTATTATGGATGTGACACAGTAACTAAGCAGCCAGAATTTGAGATCAGATCTCCAAGCCATCCAAATTTTGCATCATCAACTGGAGTGAGAAAGATTGCTGCTGGTGAGTTTATGAGGGTTCACCCTCCTAGTTATGCAGGATTCACAGAACCTAACAGGTTTCAAAGGGTCTTGCAAAGTCAAGAAATATGTCAATTGAGATCTCTGACAGGAAAGGTTGATTTGAACTTTGGTGCCTGGGGCAAACCCAGTTGCACAAATCACAACCTGCAACAGGCAACCAAACCCAACTTTCACTCTTTAGCACCAGAAGTTATTCAAACTGCATATTTTCCTTATGGTGATATTCACAAAGCTGGCCAAGGTAGCAGCACCAGCATGTCGTGCTCTAAACCTAACAATTTCCAGCGAGAAAATGTCACATTTAACTCTCCTTCCTCTCAGTCAAGGATCATGAGAAATGAAGCTGGAAGACCAGAAGTCACAATCCAAAATGAGCAGAAGCTGCAGGACAATATTTCTGGGGCTGCTTCTTTAGGGACAAACATGAGGATTTCAAATGATGAAAGTTTCAACGGGAAGGTAAATGCTTGTAAACTATTTGGATTTCCCTTGTCTGGGGAAGTCACCACCCAAAATTTACAGAACTCGGCTAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAACAGCTACAGTGACCTGCTGATTGAACTAGAGAGACTATTTAGCATGGAAGGCCTTCTAAGAGATCCTAATAAGGGATGGAGAATCCTTTACACTGACAGTGAAAATGACATCATGGTTGTGGGAGATGACCCGTGGCATGAGTTCTGCGAGGTGGTCTCGAAGATTCATATCCATACACAAGAAGAAGTTGAGAAGATGACAATTGGGATGATGAATGATGATACCCAGAGTTGTTTGGAACAGGCACCAGTGATGATTGAAGCTTCAAAGTCTTCTTCTGTGGGTCAGCCAGATTCTTCTCCAACAGTGGTTAGAATCTAG 2418 0.4429 MEIDLNYAVTEPEKTASCNGDCDKGAACVCSLSSPTCSSSGSSSARVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQASSFSPFSSMDMPTYDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQAELAGMYLEGKELEELGADEEGNETTPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHNVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVGSQNYYPNFLSSVANAISAKSMFHVFYSPRASHADFVVPYQKYVKSIKNPVTIGTRFKMKFEMDESPERRCTSGIVTGMSDLDPYKWPKSRWRCLMVRWDEDIEINHQDRVSPWEIDPSASLPPLSIQSSRRLKKLRPGLQGASPSHLITGGSGFMDSEESVRSSKVLQGQEKSGFMSLYYGCDTVTKQPEFEIRSPSHPNFASSTGVRKIAAGEFMRVHPPSYAGFTEPNRFQRVLQSQEICQLRSLTGKVDLNFGAWGKPSCTNHNLQQATKPNFHSLAPEVIQTAYFPYGDIHKAGQGSSTSMSCSKPNNFQRENVTFNSPSSQSRIMRNEAGRPEVTIQNEQKLQDNISGAASLGTNMRISNDESFNGKVNACKLFGFPLSGEVTTQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLNSYSDLLIELERLFSMEGLLRDPNKGWRILYTDSENDIMVVGDDPWHEFCEVVSKIHIHTQEEVEKMTIGMMNDDTQSCLEQAPVMIEASKSSSVGQPDSSPTVVRI 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03430 805 CDD B3_DNA 163 265 IPR003340 GO:0003677
Viun5g03430 805 Gene3D - 329 401 - -
Viun5g03430 805 Pfam Auxin response factor 291 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun5g03430 805 Gene3D - 673 766 - -
Viun5g03430 805 Pfam AUX/IAA family 670 761 IPR033389 -
Viun5g03430 805 Pfam B3 DNA binding domain 165 266 IPR003340 GO:0003677
Viun5g03430 805 FunFam Auxin response factor 328 401 - -
Viun5g03430 805 ProSiteProfiles B3 DNA-binding domain profile. 165 267 IPR003340 GO:0003677
Viun5g03430 805 FunFam Auxin response factor 163 267 - -
Viun5g03430 805 SUPERFAMILY CAD & PB1 domains 680 756 - -
Viun5g03430 805 FunFam Auxin response factor 672 766 - -
Viun5g03430 805 ProSiteProfiles PB1 domain profile. 677 759 IPR000270 GO:0005515
Viun5g03430 805 Gene3D - 163 267 IPR015300 -
Viun5g03430 805 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 50 766 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun5g03430 805 SMART B3_2 165 267 IPR003340 GO:0003677
Viun5g03430 805 SUPERFAMILY DNA-binding pseudobarrel domain 156 277 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03430 Viun-Chr5 44421797 44427608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03430 47 805 B3 DNA Binding Superfamily AT5G60450 60.392 0.0 866
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun5g03430 AUX_IAA 8.4e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03430 - - gmx:100812909 1407.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03430 5 44421797 44427608 Viun5g03430 5 44421797 44427608 ECH
Viun5g03430 5 44421797 44427608 Viun11g01985 11 35527342 35533254 PCT